| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,857,148 – 3,857,258 |
| Length | 110 |
| Max. P | 0.999908 |
| Location | 3,857,148 – 3,857,258 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.87 |
| Mean single sequence MFE | -18.70 |
| Consensus MFE | -15.37 |
| Energy contribution | -15.37 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.89 |
| Structure conservation index | 0.82 |
| SVM decision value | 4.49 |
| SVM RNA-class probability | 0.999908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3857148 110 + 22224390 AAAAUAAUUCAAAUGCUUUUGCAGCUCAUUACGAAAGGAAGUGAUGAGAGGGGAUUGGGGGCAAA-AGAAAAAGAGGCGGGGGCGGUGCUGAAAAAAAAAAAAAAAAACAA .......((((..(((((((((..((((((((........))))))))......(((....))).-..........)))))))))....)))).................. ( -22.50) >DroEre_CAF1 39087 85 + 1 AAAAUAAUUCAAAUGCUUUUGCAGCUCAUUACGAAAGGAAGUGAUGAG---GGAUUGGAGGCACA-AAAA----------------------CAAAAAUAAAAAAAAAAGA ....((((((...(((....))).((((((((........))))))))---))))))........-....----------------------................... ( -16.30) >DroYak_CAF1 35281 86 + 1 AAAAUAAUUCAAAUGCUUUUGCAGCUCAUUACGGAAGGAAGUGAUGAG---GGAUUGGAGGCAUACAAAA----------------------CAAAAAAAAAAAACAACGA ............((((((((.(..((((((((........))))))))---.)...))))))))......----------------------................... ( -17.30) >consensus AAAAUAAUUCAAAUGCUUUUGCAGCUCAUUACGAAAGGAAGUGAUGAG___GGAUUGGAGGCAAA_AAAA______________________CAAAAAAAAAAAAAAACGA ....((((((...(((....))).((((((((........))))))))...))))))...................................................... (-15.37 = -15.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:53 2006