Locus 129

Sequence ID X_DroMel_CAF1
Location 519,781 – 519,901
Length 120
Max. P 0.846647
window181

overview

Window 1

Location 519,781 – 519,901
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.83
Mean single sequence MFE -39.52
Consensus MFE -30.76
Energy contribution -31.45
Covariance contribution 0.69
Combinations/Pair 1.10
Mean z-score -1.92
Structure conservation index 0.78
SVM decision value 0.77
SVM RNA-class probability 0.846647
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 519781 120 - 22224390
GGUUUUUGCACCCGGCCAAGUAACUUUGUGUGUGCCUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUAAGAGUUGCGGUUGGGUUUCUCCAUGGGCAUGGGGUUGGGCGAAGG
...((((((((((((((..(((((((((..(((((((.....)))).)))..)..........((((....))))))))))))))))))))..((((((....))))))....)))))). ( -43.10)
>DroSec_CAF1 6070 120 - 1
GGUUUUUGCACCCGGCCAAGUAACUUUGUGUGUGGUUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUGAGAGUUGCGGUUGGGUUUCUCCAUGGGCAAGGGGUUGGGUGAAGG
........(((((((((......((((((.(((((...(((..(((((((.(((.........((((....))))..)))))))))).)))....))))).))))))))))))))).... ( -40.00)
>DroSim_CAF1 6446 120 - 1
GGUUUUUGCACCCGGCCAAGUAACUUUGUGUGUGGUUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUGAGAGUUGCGGUUGGGUUUCUCCAUGGGCAAGGGGUUGGGUGAAGG
........(((((((((......((((((.(((((...(((..(((((((.(((.........((((....))))..)))))))))).)))....))))).))))))))))))))).... ( -40.00)
>DroEre_CAF1 5871 96 - 1
GGCUUUUGCAGCCGGCCAAGUAACUUUGUGUGUGGCUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUGAGAGUUGCGGUUGGG------------------------UGGCGU
.((....)).((((.(((.(((((((((..((..((((....))))..))..)..........((((....))))))))))))...))).------------------------)))).. ( -35.00)
>consensus
GGUUUUUGCACCCGGCCAAGUAACUUUGUGUGUGGCUUGCCAGGGCUGCGUGCUAAUUUUGAAUACUUUGUGGUGAGAGUUGCGGUUGGGUUUCUCCAUGGGCAAGGGGUUGGGUGAAGG
...((((((((((((((..(((((((((..((((((((....))))))))..)..........((((....))))))))))))))))))))..((((........))))....)))))). (-30.76 = -31.45 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:14 2006