Locus 1289

Sequence ID X_DroMel_CAF1
Location 3,847,547 – 3,847,637
Length 90
Max. P 0.993155
window2063

overview

Window 3

Location 3,847,547 – 3,847,637
Length 90
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 72.37
Mean single sequence MFE -22.47
Consensus MFE -17.72
Energy contribution -17.62
Covariance contribution -0.10
Combinations/Pair 1.21
Mean z-score -1.59
Structure conservation index 0.79
SVM decision value 2.38
SVM RNA-class probability 0.993155
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3847547 90 + 22224390
AGUACCAGCAGAUGUGGAGUGAGCAUCCUUUAGACUGGAAU-GGGGCUGAAGUAUUAUCUCAUUUCAGUAUUUGCUGUAUUUGCCGUAUUU
(((((.(((((((((((((((((.((.((((((.((.....-))..)))))).))...))))))))).))))))))))))).......... ( -26.90)
>DroSec_CAF1 30881 76 + 1
AGUACCAGCAGAUGUGGAGUGGGCAUCCUUCAGAAUGGAAUUGGGGCUGGAGUAUUAUCUCAUUUCAGUAUUUGCU---------------
......(((((((((((((((((.((.((((((..(.......)..)))))).))...))))))))).))))))))--------------- ( -22.20)
>DroEre_CAF1 29383 69 + 1
AGUGCCAGCCAAUGUGGAAUGGGCAUCCUUCGGAU-------GGAGCGGGAGUAUUAUCUCAUUUCUGUAUUUGCA---------------
.......((.((((..((((((((((((...))))-------)..((....)).....)))).)))..)))).)).--------------- ( -18.30)
>consensus
AGUACCAGCAGAUGUGGAGUGGGCAUCCUUCAGAAUGGAAU_GGGGCUGGAGUAUUAUCUCAUUUCAGUAUUUGCU_______________
.......((((((((((((((((.((.((((((.............)))))).))...))))))))).)))))))................ (-17.72 = -17.62 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:49 2006