| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,830,166 – 3,830,270 |
| Length | 104 |
| Max. P | 0.654198 |
| Location | 3,830,166 – 3,830,270 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 80.13 |
| Mean single sequence MFE | -33.61 |
| Consensus MFE | -21.65 |
| Energy contribution | -21.57 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3830166 104 - 22224390 CU-UAGGGGGGGCGGGUG--CGGCAGC--GGCG-GCGACAUCGGCU-AAAGGCAAGGCGCUCAUUAGGAUAAUUGCAGGCAAUUAACUAAAUUGCCGCCGCAUUUGUCGCU-- ..-....((.((((((((--(((((((--(.(.-.((....))((.-....))..).))))................(((((((.....))))))))))))))))))).))-- ( -40.90) >DroGri_CAF1 32922 92 - 1 UUUUGAGUUA--------------------GCU-GCGACAUUGGCGCUCAGGCAAGGCGCUCAUUAGGAUAAUUGCAGGCAAUUAACUAAAUUGCCGCCGCAUUUGUCGCUUA ..........--------------------...-((((((...((((....))..(((((..............)).(((((((.....))))))))))))...))))))... ( -30.24) >DroSec_CAF1 15606 100 - 1 CU-UAGGGGGGG----GG--CGGUAGC--GGCG-GCGACAUCGGCU-AAAGGCAAGGCGCUCAUUAGGAUAAUUGCAGGCAAUUAACUAAAUUGCCGCCGCAUUUGUCGCU-- ..-......((.----((--(((..((--((((-((((.....(((-........))).....((((..((((((....)))))).)))).))))))))))..))))).))-- ( -36.00) >DroEre_CAF1 19498 97 - 1 -----GGCUGGC----AG--CGACAUC--GGCUAAAGGCAUUGGCU-AAAGGCAAGGCGCUCAUUAGGAUAAUUGCAGGCAAUUAACUAAAUUGCCGCCGCAUUUGUCGCU-- -----.......----((--(((((.(--(((.....((((((.((-((.(((.....)))..))))..))).))).(((((((.....)))))))))))....)))))))-- ( -32.50) >DroYak_CAF1 15501 102 - 1 CUUUCGGCUGGC----AG--CGACAUC--GGCUAAAGGCAUUGGCU-AAAGGCAAGGCGCUCAUUAGGAUAAUUGCAGGCAAUUAACUAAAUUGCCGCCGCAUUUGUCGCU-- ............----((--(((((.(--(((.....((((((.((-((.(((.....)))..))))..))).))).(((((((.....)))))))))))....)))))))-- ( -32.50) >DroAna_CAF1 15602 103 - 1 UUUU-UGUUGGC----AGGACGAUAGCAAGGCA-GAGGCAGGAGCU-A-AGGCAAGGCGCUCAUUAGGAUAAUUGCAGGCAAUUAACUAAAUUGCCGCCGCAUUUGUCGCG-- ..((-(((((.(----.....).)))))))((.-(((((....((.-.-..))...)).))).....(((((.(((.(((((((.....)))))))...))).))))))).-- ( -29.50) >consensus CU_U_GGCUGGC____AG__CGACAGC__GGCU_GAGACAUUGGCU_AAAGGCAAGGCGCUCAUUAGGAUAAUUGCAGGCAAUUAACUAAAUUGCCGCCGCAUUUGUCGCU__ ....................................((((.((((......((((....((.....))....)))).(((((((.....)))))))))))....))))..... (-21.65 = -21.57 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:47 2006