| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,825,797 – 3,825,896 |
| Length | 99 |
| Max. P | 0.979141 |
| Location | 3,825,797 – 3,825,896 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 87.97 |
| Mean single sequence MFE | -31.52 |
| Consensus MFE | -25.29 |
| Energy contribution | -24.73 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.979141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3825797 99 + 22224390 ACAUGGAGCCGCUCCAAAAAGGAGCAGCACCGUCGUAAUGUAUGUAUGACGGAAUGACACUGAUGGGGUAUAUCA----------CAAAUUUCGGAGUUAUAUGGCAAA- .......((((((((.....)))))....((((((((.......)))))))).(((((.((((....((.....)----------).....)))).)))))..)))...- ( -31.50) >DroSec_CAF1 11343 109 + 1 ACAUGGAGCCGCUCCAAAAAGGAGCAGCACCGUCGUAAUGUAUGUAUGACGGAAUGACACUGAUGGGGUAUAUCACUUUUGCGAACAAAAUUCGGAGUUAUAUGGCAAA- .......((((((((.....)))))....((((((((.......)))))))).(((((.(((((((......))).(((((....))))).)))).)))))..)))...- ( -32.00) >DroSim_CAF1 11218 109 + 1 ACAUGGAGCCGCUCCAAAAAGGAGCAGCACCGUCGUAAUGUAUGUAUGACGGAAUGACACUGAUGGGGUAUAUCACUUUUGCCAACAAAAUUCGGAGUUAUAUGGCAAA- .......((((((((.....)))))....((((((((.......)))))))).(((((.((((...((((.........))))........)))).)))))..)))...- ( -33.90) >DroEre_CAF1 12201 110 + 1 ACAUGGAGCCGCUCCAAAAAGGAGCAGCACUGUCGUAAUGUAUGUAUGGCGGAAUGACUACGAUGGGGUAUAUCACUUCAGCGAACAAAAUUCGUAGUUGUUUAGCGAAA .......((.(((((.....))))).)).((((((((.......))))))))((..(((((((((((((.....))))))...........)))))))..))........ ( -32.70) >DroYak_CAF1 11434 110 + 1 ACAUGGAGCCGCUCCAAAAAGGAGCAGCACUGUCGUAAUAUAUGUAUGACGAAAUGACUGUGAUGGGGUAUAUCAGUUUUGCAAACAAAUUUCGGAGUUAUUUAGUGAAG .(((((.((.(((((.....))))).)).))((((((.......)))))).((((((((.(((((..(((.........)))...))....))).)))))))).)))... ( -27.50) >consensus ACAUGGAGCCGCUCCAAAAAGGAGCAGCACCGUCGUAAUGUAUGUAUGACGGAAUGACACUGAUGGGGUAUAUCACUUUUGCGAACAAAAUUCGGAGUUAUAUGGCAAA_ .......((.(((((.....))))).)).((((((((.......)))))))).(((((.((((............................)))).)))))......... (-25.29 = -24.73 + -0.56)
| Location | 3,825,797 – 3,825,896 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 87.97 |
| Mean single sequence MFE | -27.49 |
| Consensus MFE | -19.90 |
| Energy contribution | -20.86 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3825797 99 - 22224390 -UUUGCCAUAUAACUCCGAAAUUUG----------UGAUAUACCCCAUCAGUGUCAUUCCGUCAUACAUACAUUACGACGGUGCUGCUCCUUUUUGGAGCGGCUCCAUGU -................((.....(----------((((((.........)))))))....))................((.((((((((.....)))))))).)).... ( -25.80) >DroSec_CAF1 11343 109 - 1 -UUUGCCAUAUAACUCCGAAUUUUGUUCGCAAAAGUGAUAUACCCCAUCAGUGUCAUUCCGUCAUACAUACAUUACGACGGUGCUGCUCCUUUUUGGAGCGGCUCCAUGU -(((((...((((.........))))..)))))((((((((.........))))))))(((((.............))))).((((((((.....))))))))....... ( -28.12) >DroSim_CAF1 11218 109 - 1 -UUUGCCAUAUAACUCCGAAUUUUGUUGGCAAAAGUGAUAUACCCCAUCAGUGUCAUUCCGUCAUACAUACAUUACGACGGUGCUGCUCCUUUUUGGAGCGGCUCCAUGU -(((((((.((((.........)))))))))))((((((((.........))))))))(((((.............))))).((((((((.....))))))))....... ( -32.92) >DroEre_CAF1 12201 110 - 1 UUUCGCUAAACAACUACGAAUUUUGUUCGCUGAAGUGAUAUACCCCAUCGUAGUCAUUCCGCCAUACAUACAUUACGACAGUGCUGCUCCUUUUUGGAGCGGCUCCAUGU ....((..((..(((((((.......((((....)))).........)))))))..))..))...............(((..((((((((.....))))))))....))) ( -28.79) >DroYak_CAF1 11434 110 - 1 CUUCACUAAAUAACUCCGAAAUUUGUUUGCAAAACUGAUAUACCCCAUCACAGUCAUUUCGUCAUACAUAUAUUACGACAGUGCUGCUCCUUUUUGGAGCGGCUCCAUGU ................(((((((((....))))((((.............))))..)))))................(((..((((((((.....))))))))....))) ( -21.82) >consensus _UUUGCCAUAUAACUCCGAAUUUUGUUCGCAAAAGUGAUAUACCCCAUCAGUGUCAUUCCGUCAUACAUACAUUACGACGGUGCUGCUCCUUUUUGGAGCGGCUCCAUGU ....(((..........................((((((((.........))))))))..(((.............))))))((((((((.....))))))))....... (-19.90 = -20.86 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:45 2006