Locus 1284

Sequence ID X_DroMel_CAF1
Location 3,824,579 – 3,824,673
Length 94
Max. P 0.603553
window2056

overview

Window 6

Location 3,824,579 – 3,824,673
Length 94
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 72.64
Mean single sequence MFE -20.38
Consensus MFE -9.44
Energy contribution -10.25
Covariance contribution 0.81
Combinations/Pair 1.07
Mean z-score -2.05
Structure conservation index 0.46
SVM decision value 0.14
SVM RNA-class probability 0.603553
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3824579 94 - 22224390
CUAGGGAUUCCAGAUUUGGAAAAGACCUUGCUGCUGGAAUUGCU--AAAACACAU----------GCACCCACUACUUCAAUCCCAAUCCACCUUUU----UUUUUUUUU
...((((((((((....((......))......)))))).(((.--.........----------))).............))))............----......... ( -16.40)
>DroSec_CAF1 10136 91 - 1
CUAGGGAUUCCAGAUUUGGAACAGACCUUGGUGCUGGAAUUGC---------CAU----------GCACCCACUUCUUUGAUCCCAAUCCACCUUCUAUUAUUUUUUUUU
...((((((..(((...((......))..((((((((.....)---------)).----------)))))....)))..))))))......................... ( -22.40)
>DroSim_CAF1 10012 91 - 1
CUGGGGAUUCCAGAUUUGGAACAGAUCUUGGUGCUGGAAUUGC---------CAU----------GCACCCACUACUUUGAUCCCAAUCCACCUUCUAUUAUUUUUUUUU
...((((((..(((((((...))))))).((((((((.....)---------)).----------))))).........))))))......................... ( -23.30)
>DroYak_CAF1 10275 94 - 1
CU-GGGAUGCCAAAUUUGGAACAGACCUUGGU---AGAAGUGCUCUAAAACACUUGCGACCAAUAGCAACCACUACAUUGAUCCCAAUCCACGUUUUU------------
.(-(((((.(((....)))...........((---(((((((........)))))((........)).....))))....))))))............------------ ( -19.40)
>consensus
CUAGGGAUUCCAGAUUUGGAACAGACCUUGGUGCUGGAAUUGC_________CAU__________GCACCCACUACUUUGAUCCCAAUCCACCUUCUA___UUUUUUUUU
...((((((((((....((......))......)))))).(((......................))).............))))......................... ( -9.44 = -10.25 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:43 2006