Locus 1282

Sequence ID X_DroMel_CAF1
Location 3,815,711 – 3,815,809
Length 98
Max. P 0.707302
window2054

overview

Window 4

Location 3,815,711 – 3,815,809
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 79.19
Mean single sequence MFE -42.03
Consensus MFE -30.14
Energy contribution -29.03
Covariance contribution -1.11
Combinations/Pair 1.41
Mean z-score -1.30
Structure conservation index 0.72
SVM decision value 0.37
SVM RNA-class probability 0.707302
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3815711 98 - 22224390
UCCCUGGGCACAGCCUGCACAUAAGGGAGUGGCCGCUGGAAGGGCAACCA-AAUUGGCCCAAAUAGUGGGCUGCGGCAACGCCGGUGAAUGGCCGGAAA
(((((.((((.....))).)...)))))((.(((((.....((....)).-....((((((.....))))))))))).)).(((((.....)))))... ( -43.20)
>DroPse_CAF1 1123 98 - 1
UCCCUGGGCACAGCCCGCGCACAAAGGUGUGGCCGCCAGGCGAGCCACUA-AGCUGGCCGAGCUGGUGGGCUGCGGAUCCUCCGGAGAGUGGCCCCUCA
.....((((.((((((.(((((....)))))(((((..(((.(((.....-.))).)))..)).)))))))))(((.....))).......)))).... ( -46.30)
>DroEre_CAF1 2221 98 - 1
UCCCUGGGCACAGCCUGCGCAUAAGGGAGUGGCCGCUGGAAGGGCAACCA-AAUUGGCCAAGAUAGUGGGCUGCGGCACCGCCGGAGAAUGGCCAGAGA
((.((((.(((((((..(((........))(((((......((....)).-...)))))......)..)))))((((...)))).....)).)))).)) ( -37.80)
>DroYak_CAF1 1381 98 - 1
UCCCUGGGCACAGCCUGCGCAUAAGGGAGUGGCCGCUGGAAGGGCAACCA-AAUUGGCCAACAUAGUGGGCUGCGGCACCGCUGAAGAAUGGCCGGAAA
(((.(((.(((..(((.......)))..))).)))..))).((....)).-..(((((((...((((((((....)).)))))).....)))))))... ( -37.80)
>DroAna_CAF1 1187 98 - 1
UCCCUGGGCCCAACCCGCUCACAAGGGCGUAGCCGUCAGUCGGGCCACCA-AGCUGGCCGAGUUGGUGGGUUGCGGUUCCCUUGGAGAUUGGCCAGAGA
((.((((..((((....(((.(((((((((((((..(((((((.(((...-...))))))).)))..).))))))...))))))))).)))))))).)) ( -41.30)
>DroPer_CAF1 1117 99 - 1
UCCCUGGGCACAGCCCGCGCACAAAGGUGUGGCCGCCAGGCGAGCCACUAAAGCUGGCCGAGCUGGUGGGCUGCGGAUCCUCCGGAGAGUGGCCCCUCA
.....((((.((((((.(((((....)))))(((((..(((.(((.......))).)))..)).)))))))))(((.....))).......)))).... ( -45.80)
>consensus
UCCCUGGGCACAGCCCGCGCACAAGGGAGUGGCCGCCAGAAGGGCAACCA_AACUGGCCGAGAUAGUGGGCUGCGGCACCGCCGGAGAAUGGCCAGAAA
...((((.((((((((((.......((.....))(((((..((....))....))))).......))))))))((((...)))).....)).))))... (-30.14 = -29.03 +  -1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:41 2006