Locus 1281

Sequence ID X_DroMel_CAF1
Location 3,810,512 – 3,810,606
Length 94
Max. P 0.758063
window2053

overview

Window 3

Location 3,810,512 – 3,810,606
Length 94
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 79.72
Mean single sequence MFE -22.61
Consensus MFE -14.99
Energy contribution -16.43
Covariance contribution 1.45
Combinations/Pair 1.20
Mean z-score -1.63
Structure conservation index 0.66
SVM decision value 0.49
SVM RNA-class probability 0.758063
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3810512 94 + 22224390
UCUAAUUA----AUGCCAGCGUAAAAACAAUUCGAUACCAGGGCUGCGCAACAACUGAAUAGGGUCACAAAGCCCUGGUAAGUUAUCGAAUG--ACAGAU
(((.....----(((....))).......((((((((((((((((.........((.....)).......)))))))))).....)))))).--..))). ( -23.19)
>DroGri_CAF1 11365 91 + 1
UACAAUUAAGCAAUGCUAACAACAAAAAACUUAAAUACCAGGGCUUCGAAG---------UCGUUGUUACUGCCCUUGUCUAUAAUCGAACAGGGCUGUU
........((((....(((((((......((........))((((....))---------)))))))))..(((((..((.......))..))))))))) ( -17.50)
>DroSec_CAF1 9372 94 + 1
UCUAAUUA----AUGCCAGCGUAAAAACAAUUUGAUGCCAGGGCUGCGCAACAACUGAAUUGGGUCACAUAGCCCUGGUAAGUUAUCGAAUA--ACAGAU
(((.....----(((....))).......((((((((((((((((((.(((........))).)).....))))))))).....))))))).--..))). ( -23.10)
>DroSim_CAF1 9627 94 + 1
UCUAAUUA----AUGCCAGCGUAAAAACAAUUCGAUGCCAGGGCUGCGCAACAACUGAAUUGGGUCACAUAGCCCUGGUAAGUUAUCGAAUA--ACAGAU
(((.....----(((....))).......((((((((((((((((((.(((........))).)).....))))))))).....))))))).--..))). ( -25.20)
>DroEre_CAF1 9408 94 + 1
UCUAAUUA----AUGCCAGCGUAAAAACAAUGCGAAACCAGGGCUGCGCCACAACUGAAUUGGGUCAUAUAGCCCUGGUAAGUUAUCGAAUG--ACAAAU
........----......((((.......))))...((((((((((.(((.(((.....))))))....))))))))))..(((((...)))--)).... ( -25.40)
>DroYak_CAF1 9445 94 + 1
UCUAAUUA----AUGCCAGCGUAAAAACAAUGCGAAACCAGGGCUGCGCAACAACUGAAUUGGGUCAUAUUGCCCUGGUGAGUUAUCGAAUG--ACAGAU
(((.....----......((((.......))))...((((((((.((.(((........))).))......))))))))..(((((...)))--))))). ( -21.30)
>consensus
UCUAAUUA____AUGCCAGCGUAAAAACAAUUCGAUACCAGGGCUGCGCAACAACUGAAUUGGGUCACAUAGCCCUGGUAAGUUAUCGAAUA__ACAGAU
.............................(((((((((((((((((.(..((...........))..).)))))))))).....)))))))......... (-14.99 = -16.43 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:40 2006