Locus 1269

Sequence ID X_DroMel_CAF1
Location 3,794,147 – 3,794,243
Length 96
Max. P 0.919092
window2036

overview

Window 6

Location 3,794,147 – 3,794,243
Length 96
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 74.40
Mean single sequence MFE -25.07
Consensus MFE -16.43
Energy contribution -16.77
Covariance contribution 0.34
Combinations/Pair 1.14
Mean z-score -1.69
Structure conservation index 0.66
SVM decision value 1.13
SVM RNA-class probability 0.919092
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3794147 96 - 22224390
UUCUGUCAGCUAGUGAUGUGAAA-AAAAUAUCGAUGCAUCGGGUAUCGAUAUUUUUAG-----------------------UUUAGCGACUUUUCGAUACUUGUCAAGCAUUGGUCGUUA
........(((((((...(((.(-(((((((((((((.....))))))))))))))((-----------------------(....(((....)))..)))..)))..)))))))..... ( -26.00)
>DroSim_CAF1 15 97 - 1
UUCUGUCAGCUAGUGAUGUAAAAAAAAAUAUCGAUGCAUCGGGUAUCGAUAUUUUUCG-----------------------UUAAGCGACCUUUCGAUACUUGUCAAGCAUUGGUCGUUA
....((((.....)))).(((..((((((((((((((.....))))))))))))))..-----------------------)))(((((((....(((....))).......))))))). ( -26.40)
>DroYak_CAF1 59 118 - 1
UUCUGCCAGCUAGUGAUGUCAAA--AAACACCGAUGCAUCGGCUAUCGAUAUUUUUCGAUUUUUUUCCUUUAAGAGCAACGCUUAGUGACGUAUCGAUAUUUUCAAAACAUCGGUCGUUA
........(((((((.((((...--.....((((....))))..(((((......))))).............)).)).))).))))((((.((((((.((.....)).)))))))))). ( -22.80)
>consensus
UUCUGUCAGCUAGUGAUGUAAAA_AAAAUAUCGAUGCAUCGGGUAUCGAUAUUUUUCG_______________________UUUAGCGACCUUUCGAUACUUGUCAAGCAUUGGUCGUUA
..........................(((((((((((..((((((((((............................................))))))))))....)))))))).))). (-16.43 = -16.77 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:24 2006