Locus 1267

Sequence ID X_DroMel_CAF1
Location 3,783,396 – 3,783,498
Length 102
Max. P 0.588243
window2034

overview

Window 4

Location 3,783,396 – 3,783,498
Length 102
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.21
Mean single sequence MFE -32.77
Consensus MFE -20.50
Energy contribution -20.62
Covariance contribution 0.12
Combinations/Pair 1.14
Mean z-score -1.72
Structure conservation index 0.63
SVM decision value 0.11
SVM RNA-class probability 0.588243
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3783396 102 + 22224390
AGGACGAGGGCAUAUCCGUUACGGAAGUAAAUCAGGGGGACGACGA------------GGACGAGACCUCGUCCAACGAUGAUUACGAAGA------GCUGCUAAGCCUAGUACUGCGUC
.((((((((.....(((.((((....)))).....(....).....------------))).....))))))))...((((..(((..((.------(((....))))).)))...)))) ( -35.10)
>DroSec_CAF1 36532 102 + 1
AGGACGAGGGCAUAUCCAUUACGGAAGUAAAUCAGGAGGACGACGA------------GGACGAGACCUCGUCCAACGAUGAGUACGAAGA------GCUGAUAAGCCUAGUACUGCGCC
.((((((((.....(((.((((....))))....)))(..(.....------------)..)....))))))))..((...(((((..((.------(((....))))).))))).)).. ( -34.50)
>DroEre_CAF1 37458 120 + 1
AGGACGAGGGCAUAUCCGUUACGGAAGUAAAUCAUGAGGACGACGAGGAUAACGAGCAGGAUGAGAUCUUGUCCAACGAAGAGGAGGAAGACGAAGGUCUGCUAAAUAUGGUACUGCGUC
.(((((((..(.(((((.((((....))))(((....(.....)...)))........))))).)..))))))).(((.((.......((((....))))((((....)))).)).))). ( -33.20)
>DroYak_CAF1 38160 120 + 1
AGGACGAGGGCAUAUCCGUUACGGAAAUAAAGCAGGAGGACGACGAAAUGAACGAAGAGGAGGAUACCACGUCCAACGAAGGGGACGAAGAGGAAGGUCUGCUAAACAUGGUACUGCGUC
..((((((..(...((((...)))).....((((((.(((((.((.......))....((......)).)))))......(....)...........)))))).......)..)).)))) ( -28.30)
>consensus
AGGACGAGGGCAUAUCCGUUACGGAAGUAAAUCAGGAGGACGACGA____________GGACGAGACCUCGUCCAACGAAGAGGACGAAGA______GCUGCUAAACAUAGUACUGCGUC
.((((((((.....(((.((((....)))).......(.....)..............))).....)))))))).........................(((((....)))))....... (-20.50 = -20.62 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:23 2006