Locus 1265

Sequence ID X_DroMel_CAF1
Location 3,768,729 – 3,768,828
Length 99
Max. P 0.958903
window2031

overview

Window 1

Location 3,768,729 – 3,768,828
Length 99
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 73.21
Mean single sequence MFE -26.96
Consensus MFE -16.16
Energy contribution -16.80
Covariance contribution 0.64
Combinations/Pair 1.28
Mean z-score -1.97
Structure conservation index 0.60
SVM decision value 1.49
SVM RNA-class probability 0.958903
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3768729 99 + 22224390
ACACAAUUGUACAUCACAAUUAAGAUGGAGUUUUCCCGCAGUGAAGAAAUGCCGUUGGAAGCCAUGUUCCCAAGGGCUUUCACUUCGCGGGGGCUCCAA
....((((((.....))))))....((((((..(((((((((((((....(((.((((.(((...))).)))).))))))))))..)))))))))))). ( -38.70)
>DroSec_CAF1 22200 87 + 1
ACACAAUUGUACACCAAAAUUAAGAUGGAGUUUUCCCGCAGUGAAGAAAUACCGAAGAAA------------UGGGCUCUCACAUCGCGGGGGCUCCAG
.........................((((((..((((((.((((.((....(((......------------)))..))))))...)))))))))))). ( -24.30)
>DroSim_CAF1 19978 76 + 1
ACACAAUUGUACACCACAAUUAAGAUGGAGUUUUCCCGCAGUGAAG-----------AAA------------UGGGUUCUCACAUCGCGGGGGCUCCAA
....((((((.....))))))....((((((..((((((.((((.(-----------((.------------....)))))))...)))))))))))). ( -25.80)
>DroEre_CAF1 22867 99 + 1
ACUGAACUGAACACCACAAUUAAGAAGGAGUUUUCCCGCAGUGAAGAAAUGCUGAUUGAAACCAUAUUCCCAAGGGUUUUCGCUUCACGGGGGCUUCAA
..........................(((((..(((((.((((((((((((.((........))))))((....))))))))))...)))))))))).. ( -19.50)
>DroYak_CAF1 23916 95 + 1
----AACCGAACAUCACAAUUGAGAAGUAGUUUUCCCGCAGUGGGGAAAUGCUGAUUGAAGCCAUCUUCCCAAGGGUUUUCGCUUCACGGGAGCUCCAA
----..(((....(((....)))((((..(....(((....((((((.(((((......)).))).)))))).)))...)..)))).)))......... ( -26.50)
>consensus
ACACAAUUGUACACCACAAUUAAGAUGGAGUUUUCCCGCAGUGAAGAAAUGCCGAUGGAA_CCAU_UUCCCAAGGGUUUUCACUUCGCGGGGGCUCCAA
..........................(((((..(((((((((((((...............................)))))))..))))))))))).. (-16.16 = -16.80 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:20 2006