| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,762,632 – 3,762,749 |
| Length | 117 |
| Max. P | 0.968826 |
| Location | 3,762,632 – 3,762,749 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 76.51 |
| Mean single sequence MFE | -28.20 |
| Consensus MFE | -14.93 |
| Energy contribution | -15.80 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.968826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3762632 117 - 22224390 UUAUCCUUUGUUCAAGAGGAGAAAAGCAAUGGUAUUGUUUGGCCUUUUUGCACAAUGGCAAAUGGAAUUGUAAAGUUGCAGCAAAAGUUGUAAAUUGCAAUAAAAUAAAAAGCGUAA ....((.((((.(((((((.(..(((((((...)))))))..)))))))).)))).))........(((((((..(((((((....))))))).)))))))................ ( -27.50) >DroSec_CAF1 16319 116 - 1 UUAUCCAUUGUUCAAGAGCAGAAAAGCAAAGGCAUUGUUUGGCCGCUUUGCACAAUGGCAAAUGGAAUUGUGAAGUUGCAACAAAAGUUGUAAAUUGCAAUAA-UUAAAAAGUGUAU ....(((((((...(((((.(..((((((.....))))))..).)))))..)))))))........((((..(..(((((((....))))))).)..))))..-............. ( -29.50) >DroEre_CAF1 16943 106 - 1 UUCUUCUUUGUUGAAGAGC--------AAAGGCAUUGU-UGGCCAUUUUGCACAAUGGGAAAUGCCAUUGUAAAGUUGCAACCAAAGUUGUACAUAGCCAUA--GUAAAAUGUGAAU .(((((......)))))((--------((((((.....-..)))..)))))(((((((......)))))))...((.(((((....))))))).....((((--......))))... ( -27.20) >DroYak_CAF1 16272 104 - 1 UUAUCCAUUGUUGAAGUGCC----AUUGAAGGCAUUGU-UGGCUAUUUCGCACAAUGGAGAAUGGAAUUGUAAAGUUGCAAGCAGAGUUGUAAAUUGCAAUAA-GUAAGA------- ...(((((((((((((((((----(.((....))....-)))).)))))).)))))))).......(((((((..((((((......)))))).)))))))..-......------- ( -28.60) >consensus UUAUCCAUUGUUCAAGAGCA____AGCAAAGGCAUUGU_UGGCCAUUUUGCACAAUGGCAAAUGGAAUUGUAAAGUUGCAACAAAAGUUGUAAAUUGCAAUAA_GUAAAAAGUGUAU ....(((((((..............((((.(((........)))...)))))))))))........((((((...(((((((....)))))))..))))))................ (-14.93 = -15.80 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:18 2006