Locus 126

Sequence ID X_DroMel_CAF1
Location 517,794 – 517,902
Length 108
Max. P 0.946534
window171

overview

Window 1

Location 517,794 – 517,902
Length 108
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.23
Mean single sequence MFE -21.08
Consensus MFE -17.29
Energy contribution -17.73
Covariance contribution 0.44
Combinations/Pair 1.11
Mean z-score -2.20
Structure conservation index 0.82
SVM decision value 1.36
SVM RNA-class probability 0.946534
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 517794 108 + 22224390
UACUUCUCACUCC--------CACCUCCAAACUCUUUAGUUUGUAAUUCUAUUUAUAUGCACUCGCUCCAGAGUAUCCC----UAUGUACUCGGAUCUUGGGUAAGCAUGUACUUCUUUU
.............--------......((((((....))))))..........((((((((((((.(((.((((((...----...)))))))))...)))))..)))))))........ ( -22.10)
>DroSec_CAF1 4088 108 + 1
UAGUUCCUACUCC--------CACCUCCAAACUCUUUAGUUUGUAAUUCUAUUUAUAUGCACUCGCUCCAGAGUAUCCC----UAUGUACUCGGAUCUUGGGUAAGCAUGUACUUCUUAU
.............--------......((((((....))))))..........((((((((((((.(((.((((((...----...)))))))))...)))))..)))))))........ ( -22.10)
>DroSim_CAF1 4105 108 + 1
UAGUUCCUACUCC--------CACCUCCAAACUCUUUAGUUUGUAAUUCUAUUUAUAUGCACUCGCUCCAGAGUAUCCC----UAUGUACUCGGAUCUUGGGUAAGCAUGUACUUCUUAU
.............--------......((((((....))))))..........((((((((((((.(((.((((((...----...)))))))))...)))))..)))))))........ ( -22.10)
>DroEre_CAF1 3982 120 + 1
UACUUUCUUCUUCCACCUUUCCACCUCCAAACUCUUUGGCUUGUAAUUCUAUUUAUAUGCACUCGCGUCGGAGUAUCUACACCCAUGUACUCGGAUCUUUAGUGGGCAUGCACUUCUGUU
...................(((((..............((.(((((......))))).))......(((.((((((..........)))))).))).....))))).............. ( -18.00)
>consensus
UACUUCCUACUCC________CACCUCCAAACUCUUUAGUUUGUAAUUCUAUUUAUAUGCACUCGCUCCAGAGUAUCCC____UAUGUACUCGGAUCUUGGGUAAGCAUGUACUUCUUAU
...........................((((((....))))))..........((((((((((((.(((.((((((..........)))))))))...)))))..)))))))........ (-17.29 = -17.73 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:58 2006