| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,750,576 – 3,750,681 |
| Length | 105 |
| Max. P | 0.814909 |
| Location | 3,750,576 – 3,750,681 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.50 |
| Mean single sequence MFE | -41.82 |
| Consensus MFE | -17.56 |
| Energy contribution | -18.37 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3750576 105 + 22224390 AAAGACAAUGGCCAACAACUGUUG---------GCCCACA---G---GGUGGCGACGAGAGGUCACAGUUGAAGGCUCUAGGCGGUCGGGGUCACCUAAUUAGGGUGGCCAUUAUCCUCU .........(((((((....))))---------)))...(---(---(((((((((.((((.(((....)))...)))).....)))).((((((((.....)))))))).))))))).. ( -39.50) >DroSec_CAF1 4291 105 + 1 AAAGACAAUGGCCAACAACUGUUG---------GCCCACA---G---GGAGGCGACGAGAGGUCACAGUUGAAGGCUCCAGGCGGUCGGGGUCACCUAAUUAGGGUGGCCCUUCUGCUCU .........(((((((....))))---------)))....---.---((((.(..(((..(....)..)))..).)))).(((((..((((((((((.....)))))))))).))))).. ( -45.90) >DroSim_CAF1 4315 105 + 1 AAAGACAAUGGCCAACAACUGUUG---------GCCCACA---G---GGAGGCGACGAGAGGUCACAGUUGAAGGCUCUAGGCGGUCGGGGUCACCUAAUUAGGGUGGCCCUUCUGCUCU .........((((..(((((((..---------(((....---.---...)))(((.....))))))))))..))))...(((((..((((((((((.....)))))))))).))))).. ( -45.10) >DroEre_CAF1 4224 111 + 1 AAAGACAAUGGCGAG---UUGUUGGUGGCGACGACCCACA---A---GGUGGCGACGAGAGAUCACAGUCGAGGGCUCUCGGCGGUCGGGGUCACCUAAUUAGGGUGGCCCUACUGCUCU ........((.((..---((((.((((....).))).)))---)---..)).)).((((((.((......))...))))))(((((.((((((((((.....)))))))))))))))... ( -46.20) >DroYak_CAF1 4385 100 + 1 AAAGACAAUGGCGAG---UUCUUG---------CCCCACA---A---GGAGGCGACGAGAGGUCACAUUUGAGGGCU--AGGCGGUCGGGGUCACCUAAUUAGGGUGACCCUUCUCCUCU ...(((....((.((---((((((---------((((...---.---)).)))(((.....)))......)))))))--..)).)))((((((((((.....))))))))))........ ( -39.40) >DroAna_CAF1 4916 94 + 1 AAGGACAAUGGCAC--A-AUGCCG---------GCACAUCCUUGGGCCGAGGAGGCCAGAGUUCACAC------------AGUGGCC-GGGUCAGGUAAUUAG-GUGGCCUUCCUCCCCC (((((...((((..--.-..))))---------.....)))))(((..((((((((((..((....))------------..)))))-((((((.........-.)))))))))))))). ( -34.80) >consensus AAAGACAAUGGCCAA_A_CUGUUG_________GCCCACA___G___GGAGGCGACGAGAGGUCACAGUUGAAGGCUCUAGGCGGUCGGGGUCACCUAAUUAGGGUGGCCCUUCUCCUCU .........(((.........................................(((.....)))..........((.....)).)))((((((((((.....))))))))))........ (-17.56 = -18.37 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:13 2006