| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,747,318 – 3,747,417 |
| Length | 99 |
| Max. P | 0.929462 |
| Location | 3,747,318 – 3,747,417 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 82.49 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -20.56 |
| Energy contribution | -21.25 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3747318 99 - 22224390 GCGCGUAUGCGCUAUUUUUAUGCGUGUAACAUUGCGUAUACGCCUAGGAUGCAGGACACAUGACGUAUGCGUUAUUUUGUAAAUGUUAUCAUUCUUUUU ..((((((((((.....((((....))))....))))))))))....((((((..(((.((((((....))))))..)))...)).))))......... ( -27.30) >DroSec_CAF1 1004 99 - 1 CUGCGUAUGCGCAAUUUUUACGAGUGUGACAUUGCGUAUACGCCUAGGAGGCAGCUGACAUGGCGUAUGCGUUAUUUUCAAAAUGUUAACAUUCCGUUU .((((....))))........(((((((((((((((((((((((..(..((...))..)..))))))))))).........)))))).))))))..... ( -31.70) >DroSim_CAF1 1001 99 - 1 GUGCGUAUGCGUAAUUUUUUCGAGUGUCACAUUGCGUAUACGCCUAGGAGGCAGCUGACAUGGCGUAUGCGUUAUUUUCAAAAUGUUAUCAUUCCGUUU .((((....))))........(((((..((((((((((((((((..(..((...))..)..))))))))))).........)))))...)))))..... ( -26.80) >DroYak_CAF1 1008 96 - 1 GGGCGUAUGCGCUUUUUUUAAGCGUGUGACAUUGCGUAUACGCCUAAAGGACUGCGCACAUGGCGUAUGCCUUAUAUUGAAAAUGUGAU---UCUUUUU ((((((((((((((.....))))(((......))))))))))))).((((..(((((.....)))))..))))................---....... ( -30.90) >consensus GUGCGUAUGCGCAAUUUUUACGAGUGUGACAUUGCGUAUACGCCUAGGAGGCAGCUCACAUGGCGUAUGCGUUAUUUUCAAAAUGUUAUCAUUCCGUUU ..(((((((((((((..((((....)))).))))))))))))).......(((..(((.((((((....))))))..)))...)))............. (-20.56 = -21.25 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:08 2006