Locus 1254

Sequence ID X_DroMel_CAF1
Location 3,745,013 – 3,745,130
Length 117
Max. P 0.993076
window2018

overview

Window 8

Location 3,745,013 – 3,745,130
Length 117
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 74.43
Mean single sequence MFE -39.53
Consensus MFE -23.96
Energy contribution -25.47
Covariance contribution 1.51
Combinations/Pair 1.11
Mean z-score -2.30
Structure conservation index 0.61
SVM decision value 2.37
SVM RNA-class probability 0.993076
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3745013 117 - 22224390
UACUUUCCUGUGCAAUACGGGCUACGAUUGCUCACUGUUCGUCUCACUGGCAUUUGAAGCUGGACAAGGCCCAAAGGGCCGAAAAGUGGCAUUGCCAUGGUCGUUUGUGCAGGAUUG-
..(..(((((..(((.((((.(..((((.((.((((.(((((((....(((.......)))))))..(((((...)))))))).))))))))))....).)))))))..)))))..)- ( -45.20)
>DroSec_CAF1 17883 116 - 1
UACUUUCCUGUGCAAUACGGGCUCCGAUUGGUCUCUGUUCGCCUCGCUGGCAUUUGCAGCUGGACAAGGC-CAAAGGGCCGAAAAGUGGCAUUGCCAUGGUCGUUUGUGCAGGAUUG-
..(..(((((..(((.((.(((.((..(((((((.((((((....((((.(....)))))))))))))))-))).)))))((...(((((...)))))..)))))))..)))))..)- ( -49.00)
>DroYak_CAF1 18486 90 - 1
UACUUUCAUGCUC-----------------GUCUCUGUUCGCCACUCUGGCAUUUGCAGCUGGACAAGGC-CAAAG-GCCAAAAAGUGGCAUUGUU---------UAUGCAGGAAUUU
((((((.......-----------------((((((((..(((.....)))....))))..))))..(((-(...)-)))..))))))((((....---------.))))........ ( -24.40)
>consensus
UACUUUCCUGUGCAAUACGGGCU_CGAUUGGUCUCUGUUCGCCUCACUGGCAUUUGCAGCUGGACAAGGC_CAAAGGGCCGAAAAGUGGCAUUGCCAUGGUCGUUUGUGCAGGAUUG_
.....((((((((((.((((.(............((....((((..(..((.......))..)...))))....)).((((.....))))........).)))))))))))))).... (-23.96 = -25.47 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:07 2006