Locus 1252

Sequence ID X_DroMel_CAF1
Location 3,743,267 – 3,743,362
Length 95
Max. P 0.996928
window2012

overview

Window 2

Location 3,743,267 – 3,743,362
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 90.38
Mean single sequence MFE -25.06
Consensus MFE -22.68
Energy contribution -22.12
Covariance contribution -0.56
Combinations/Pair 1.12
Mean z-score -2.09
Structure conservation index 0.90
SVM decision value 2.77
SVM RNA-class probability 0.996928
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3743267 95 - 22224390
ACUCCAAGUUCACUGUCUGCGUCCUU-UUCCACGUUUCAUGGCUGGGCUAAAAAACAAAAACAAAAAACAAGUCAAUGUGGACAGAGAAAGGGGAG
.((((...(((.(((((..(((((..-..(((.......)))..))))............((.........))....)..))))).)))...)))) ( -24.30)
>DroSec_CAF1 16861 88 - 1
ACUCCAAGUUCACUGUCUGCGUCCUUUUUCCACGUUUCAUGGCUGGGCUAAAAAA--------AAAAACAAGUCAAUGUGGACAGAGAAAGGGGAG
.((((...(((.(((((..(((........((.(((....)))))((((......--------.......)))).)))..))))).)))...)))) ( -23.72)
>DroSim_CAF1 17903 87 - 1
ACUCCAAGUUCACUGUCUGCGUCCUUUUUCCACGUUUCAUGGCUGGGCUAAAAA---------AAAAACAAGUCAAUGUGGACAGAGAAAGGGGAG
.((((...(((.(((((..(((........((.(((....)))))((((.....---------.......)))).)))..))))).)))...)))) ( -23.80)
>DroEre_CAF1 16637 84 - 1
ACUCCAAGUUCACUGUCUGCGUCCUU-UUCCACGUUUCAUGGCUGGGCUAAAAA-----------AACCAAGUCAAAGUAGAUAGAGGAAGGGGAG
.((((...(((.((((((((((....-....))......(((((((........-----------..)).)))))..)))))))).)))...)))) ( -25.00)
>DroYak_CAF1 16801 83 - 1
ACUCCAAGUUCACUGUCUGCGUCCUU-UUCCACGUUUCAUGGCUGGGCUAAAAA-----------AA-CAAGUCCAAGUAGACAGAGAAAGGGGAG
.((((...(((.((((((((......-..(((.......))).((((((.....-----------..-..)))))).)))))))).)))...)))) ( -28.50)
>consensus
ACUCCAAGUUCACUGUCUGCGUCCUU_UUCCACGUUUCAUGGCUGGGCUAAAAA_________AAAAACAAGUCAAUGUGGACAGAGAAAGGGGAG
.((((...(((.((((((((.........(((.(((....))))))(((.....................)))....)))))))).)))...)))) (-22.68 = -22.12 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:02 2006