Locus 1251

Sequence ID X_DroMel_CAF1
Location 3,740,114 – 3,740,213
Length 99
Max. P 0.850918
window2011

overview

Window 1

Location 3,740,114 – 3,740,213
Length 99
Sequences 4
Columns 102
Reading direction reverse
Mean pairwise identity 85.92
Mean single sequence MFE -21.93
Consensus MFE -15.74
Energy contribution -16.37
Covariance contribution 0.63
Combinations/Pair 1.08
Mean z-score -2.08
Structure conservation index 0.72
SVM decision value 0.79
SVM RNA-class probability 0.850918
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3740114 99 - 22224390
---GGAAAAACCGCAAUUGCAAUAUACAUACGACAUACAUAAUAUGUAUGUAGAAAUACAGGGCAAGGAAUUGCACUCUAUUUUGUUAUGUCGUAUUUGUGG
---.......((((((.(((.(((((......((((((((...)))))))).((((((.((.((((....)))).)).))))))..))))).))).)))))) ( -26.70)
>DroSec_CAF1 13817 85 - 1
---GGAAAAACCGCAAUUGCAAUAUACAUAC--------------AUAUGUAGAGAAACAGGGCAAGGAAUUGCACUCUAUUUUGUUAUGUCGUUUUUGUGG
---.......((((((..((.(((((...((--------------(...((((((.......((((....)))).))))))..)))))))).))..)))))) ( -20.90)
>DroSim_CAF1 14781 88 - 1
ACAGGAAAAACCGCAAUUGCAAUAUACAUAC--------------AUAUGUAGAGAAACAGGGCAAGGAAUUGCACUCUAUUUUGUUAUGUCGUUUUUGUGG
..........((((((..((.(((((...((--------------(...((((((.......((((....)))).))))))..)))))))).))..)))))) ( -20.90)
>DroYak_CAF1 13781 85 - 1
---GGAAAAACCGCAAAUCCAAUAUGCAUAC--------------AUAUGUAGCGAUACAGGGCAAAGAAUUGCACUCUAUUUUGUUAUGUCGUUUUUGUGG
---.......(((((((..(.(((((....)--------------))))(((((((...(((((((....)))).).))...)))))))...)..))))))) ( -19.20)
>consensus
___GGAAAAACCGCAAUUGCAAUAUACAUAC______________AUAUGUAGAGAAACAGGGCAAGGAAUUGCACUCUAUUUUGUUAUGUCGUUUUUGUGG
..........((((((..((....((((((................))))))((((((.((.((((....)))).)).))))))........))..)))))) (-15.74 = -16.37 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:01 2006