| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,737,981 – 3,738,094 |
| Length | 113 |
| Max. P | 0.665591 |
| Location | 3,737,981 – 3,738,094 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 90.84 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -18.70 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665591 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3737981 113 + 22224390 CCCAGCUUAUGUCCAGUUUCUGUUGCCCCACC---ACGAAUCGAAUUCGAUGCCCCAUUAAAUCUGAUCCAGUUAAAUAUAUACUCGCUAAGCCUCUUGGCCACUGGACUUUCAGC ....(((...(((((((...............---..(.((((.(((..(((...)))..))).)))).)................((((((...)))))).)))))))....))) ( -21.60) >DroSec_CAF1 11690 110 + 1 CCCAGCUUAUGUCCAGUUUCUGUUGCCCCAGC---AC-AAUCGAAUUCGAUGCCCCAUUAAAUCUGGUCCAGUUAAAUAUAU--UCGCUAAGCCUCCUGGCCACUGGACUUUCAGC ....(((...(((((((............(((---..-.((((....))))(..(((.......)))..)............--..)))..(((....))).)))))))....))) ( -24.50) >DroSim_CAF1 12690 110 + 1 CCCAGCUUAUGUCCAGUUUCUGUUGCCCCAGC---AC-AAUCGAAUUCGAUGCCCCAUUAAAUCUGAUCCAGUUAAAUAUAU--UCGCUAAGCCUCCUGGCCACUGGACUUUCAGC ....(((...(((((((............(((---..-.((((....))))............(((...)))..........--..)))..(((....))).)))))))....))) ( -22.20) >DroEre_CAF1 11429 110 + 1 CCCAGCUUAUGUCCAGUUUCCGUUGGCGCUCG---AU-AAUCGAUGUCGAUGCCCCAUUAAAUCUCAUCCAGUUAAAUAUAU--UCCUUAAGCCUCUUGGCCACUGGACUUUCAGC ....(((...(((((((......(((.(((((---((-(.....)))))).)).))).........................--.......(((....))).)))))))....))) ( -27.90) >DroYak_CAF1 11734 113 + 1 CCCAGCUUAUGUCCAGUUUCUGUUGCCUCUCGACGAC-AAUCGAUUUCGUUGCCCCAUUAAAUCUCAUCCAGUUAAAUAUAU--UCCUUAAGCCUCUUGGCCACUGGACUUUCAGC ....(((...(((((((.............((((((.-........))))))..............................--.......(((....))).)))))))....))) ( -20.70) >consensus CCCAGCUUAUGUCCAGUUUCUGUUGCCCCACC___AC_AAUCGAAUUCGAUGCCCCAUUAAAUCUGAUCCAGUUAAAUAUAU__UCGCUAAGCCUCUUGGCCACUGGACUUUCAGC ....(((...(((((((......................((((....))))........................................(((....))).)))))))....))) (-18.70 = -18.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:05:00 2006