Locus 1249

Sequence ID X_DroMel_CAF1
Location 3,737,320 – 3,737,415
Length 95
Max. P 0.613123
window2009

overview

Window 9

Location 3,737,320 – 3,737,415
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 95.89
Mean single sequence MFE -19.42
Consensus MFE -17.30
Energy contribution -17.50
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.89
SVM decision value 0.16
SVM RNA-class probability 0.613123
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3737320 95 + 22224390
UUGUAGGGAGCACCAGUUGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUG
((((((..(((........)))..))))))..........((((..((((((........))))))....))))..................... ( -19.20)
>DroSec_CAF1 11080 95 + 1
UGGUAGGGAGCACCAGUUGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAACAACAAGUUAACCAUUAGUCAAAUG
..((((..(((........)))..)))).(((((............((((((........)))))).((((.....))))....)))))...... ( -16.80)
>DroSim_CAF1 12067 95 + 1
UGGUAGGGAGCACCAGUUGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUG
((((..((((....(((((........)))))....))))((((..((((((........))))))....))))......))))........... ( -19.30)
>DroEre_CAF1 10842 94 + 1
GUGUAGGGAGCCCCAGUUGGCUUUCUAUAACUAAACCUCCGUUCGCGUAUCACACUCAAAUGAUAUCUAAGAACAAGUU-ACCAUUAGUCAAAUG
.(((((..((((......))))..)))))...........((((..((((((........))))))....)))).....-............... ( -21.70)
>DroYak_CAF1 11157 95 + 1
UUGUAGGGAGCUCCAGUUGGCUUUCUAUAACUAAACCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUG
((((((..((((......))))..))))))..........((((..((((((........))))))....))))..................... ( -20.10)
>consensus
UUGUAGGGAGCACCAGUUGGCUUUCUAUAACUAAAUCUCCGUUCGCGUAUCACACUUAAAUGAUAUAUAAGAACAAGUUAACCAUUAGUCAAAUG
..((((..(((........)))..))))............((((..((((((........))))))....))))..................... (-17.30 = -17.50 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:59 2006