Locus 1248

Sequence ID X_DroMel_CAF1
Location 3,730,602 – 3,730,702
Length 100
Max. P 0.791123
window2008

overview

Window 8

Location 3,730,602 – 3,730,702
Length 100
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.03
Mean single sequence MFE -28.80
Consensus MFE -20.71
Energy contribution -21.13
Covariance contribution 0.42
Combinations/Pair 1.14
Mean z-score -2.04
Structure conservation index 0.72
SVM decision value 0.59
SVM RNA-class probability 0.791123
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3730602 100 - 22224390
ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAGCGGUGAAAUUU--------CUGUUCGCCAUGGGCGUGGGUAGCCCCACCAAAAG
....(((..(((((.((..(((........)))..)).)))))...)))(((...((((((....--------...))))))...)))(((((....)))))...... ( -28.80)
>DroPse_CAF1 9651 100 - 1
ACCAUGUCGA--GACCCAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAACGGAGAAAUUUUUUUUUGUUUGUUUGCCAUCUGCGUGGGCC----UCGAUCA--
.....(((((--(.(((((((....(((((((.......)))))))(((((.(((((((((....))))))))).).)))).....))))))).)----)))))..-- ( -32.50)
>DroSec_CAF1 4389 100 - 1
ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAACCAGCGGUGAAAUUU--------CUGUUCGCCAUGGGCGUGGGUAGUCCCCCACCACU
.(((((.(((((((.....(((...(((((((.......)))))))((.....)))))......)--------)).)))).)))))(.(((((......))))))... ( -27.80)
>DroEre_CAF1 4330 90 - 1
ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAGCGGUGAAAUUU--------CUGUUCGCCAUGGGCGUGGGUAGAA----------
.............(((((((((...(((((((.......)))))))((.....))((((((....--------...))))))...)))))))))....---------- ( -26.30)
>DroYak_CAF1 4623 90 - 1
ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAGCGGUGAAAUUU--------CUGUUCGCCAUGGGCGUGGGUAGUC----------
.............(((((((((...(((((((.......)))))))((.....))((((((....--------...))))))...)))))))))....---------- ( -26.30)
>DroPer_CAF1 10225 93 - 1
ACCAUGUCGA--GACCCAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAACGGAGAAAUUUU-------UUGUUUGCCAUCUGCGUGGGCC----UCGAUCA--
.....(((((--(.(((((((....(((((((.......)))))))((((.(((..((....))..-------))).)))).....))))))).)----)))))..-- ( -31.10)
>consensus
ACCAUGUCGAGAGACCUAUGCCAAAAUUAAGGUUAAGUUCUUUAAUGCAGCCAGCGGUGAAAUUU________CUGUUCGCCAUGGGCGUGGGUAG_C__C_A_CA__
.............(((((((((........((((..(((....)))..))))...((((((...............))))))...))))))))).............. (-20.71 = -21.13 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:58 2006