| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,687,345 – 3,687,450 |
| Length | 105 |
| Max. P | 0.595233 |
| Location | 3,687,345 – 3,687,450 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 76.63 |
| Mean single sequence MFE | -39.20 |
| Consensus MFE | -18.27 |
| Energy contribution | -20.60 |
| Covariance contribution | 2.33 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.595233 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3687345 105 - 22224390 --GACUACAGGAUCCCAGGACUUAUCCGGGACAAGGAUCUAA-ACAG-CCCUGGACACGCAAGG-UUGUGUGGAGGGGGUGUGAACCUGGCCGCCAGGUAAAGU------CAUUGA --((((.((((.((((.(((....)))))))...........-(((.-((((...((((((...-.))))))..)))).)))...))))(((....)))..)))------)..... ( -40.40) >DroSec_CAF1 21244 93 - 1 --------------CCAGGACUUAUCCGGGAACAGGAUCUAA-ACAG-CCCCGGACACGCAAGG-UUGUGUGCAGGGGGUGUGAACCUGGCCGUCAGGUAGAGU------CAUUGA --------------.((((((((..((..((.((((.((...-(((.-((((.(.((((((...-.))))))).)))).))))).))))....)).))..))))------).))). ( -36.30) >DroSim_CAF1 23993 105 - 1 --GACUACAGGAUCCCAGGACUUAUCCGGGAACAGGAUCUAA-ACAG-CCCCGGACACGCAAGG-UUGUGUGGAGGGGGUGUGAACCUGCCCGCCAGGUAGAGU------CAUUGA --((((...((((((..(((....)))(....).))))))..-(((.-((((...((((((...-.))))))..)))).)))....(((((.....))))))))------)..... ( -40.90) >DroEre_CAF1 26067 113 - 1 GGGACUACAGGAUCCCAGGACUUAUCCGCGAACACCAUCUAA-ACAC-CCCUGGACACGCAAGG-CUGUGUGGAGGGGGUGUGAACCGGGCCGCCAGGUAGAGUUAGACUCCUUGA (((((.....).)))).(((....)))(((....((......-((((-((((...((((((...-.))))))..))))))))......)).)))((((..(((.....))))))). ( -40.20) >DroYak_CAF1 21490 105 - 1 --GACUACAGGAUCCCAGGACUUAUCCGGGAACAGGAUCUAA-ACAC-CCCUGGACACGCAAUG-UUGAGUGGAGGGGGUGUGAACCUGGCCGCCAGGUAGAGU------CAUUGA --((((...((((((..(((....)))(....).))))))..-((((-((((...(((.((...-.)).)))..))))))))..((((((...))))))..)))------)..... ( -41.80) >DroPer_CAF1 27218 99 - 1 --GUCA----GCGGCCAGGACUUAUCCGGG-CCGGGAUCUGCGACAGGCCACAGGAACACAUGUGUGCAGUGGAUGGGGUGUGAACCUUACACUCAGCUACUAU------A----C --(((.----.(((((.(((....))).))-)))(......))))..((((((........)))).))(((((...((((((((...))))))))..)))))..------.----. ( -35.60) >consensus __GACUACAGGAUCCCAGGACUUAUCCGGGAACAGGAUCUAA_ACAG_CCCCGGACACGCAAGG_UUGUGUGGAGGGGGUGUGAACCUGGCCGCCAGGUAGAGU______CAUUGA ............((((.(((....))))))).................((((...((((((.....))))))..))))......(((((.....)))))................. (-18.27 = -20.60 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:40 2006