Locus 1235

Sequence ID X_DroMel_CAF1
Location 3,680,940 – 3,681,032
Length 92
Max. P 0.541901
window1989

overview

Window 9

Location 3,680,940 – 3,681,032
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 88.15
Mean single sequence MFE -18.80
Consensus MFE -14.86
Energy contribution -14.97
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.90
Structure conservation index 0.79
SVM decision value 0.02
SVM RNA-class probability 0.541901
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3680940 92 + 22224390
GACUUCGAAGCUUAGAUUUAAAGUUGAGAAGAAUAGCUCGAAUAGAUCAAGUAACAUUUUUCUUGUUUAAAUUUAUAAACGAAGACCAUUGU
..(((((.....((((((((((..((((((((((.(((.((.....)).)))...))))))))))))))))))))....)))))........ ( -18.70)
>DroSec_CAF1 14922 86 + 1
GACUUCGAAGCUUAAAUUUAAACUUGAGCAGAACCACUCGAAUUGAUCCAG------UUUUCUUGUUUAAAUUUAUAAGCGAAGACCAUUGU
..(((((.....(((((((((((..(((........)))((((((...)))------)))....)))))))))))....)))))........ ( -17.70)
>DroSim_CAF1 17646 86 + 1
GACUUCGAAGCUUAAAUUUAAACUUGAGCAGAACCACUCGAACUGAUCCAG------UUUUCUUGUUUAAAUUUAUAAGCGAAGACCAUUGU
..(((((.....(((((((((((..(((........)))((((((...)))------)))....)))))))))))....)))))........ ( -20.00)
>consensus
GACUUCGAAGCUUAAAUUUAAACUUGAGCAGAACCACUCGAAUUGAUCCAG______UUUUCUUGUUUAAAUUUAUAAGCGAAGACCAUUGU
..(((((.....((((((((((((((((........)))))...((..............))..)))))))))))....)))))........ (-14.86 = -14.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:39 2006