Locus 123

Sequence ID X_DroMel_CAF1
Location 497,693 – 497,812
Length 119
Max. P 0.659397
window162

overview

Window 2

Location 497,693 – 497,812
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.17
Mean single sequence MFE -47.52
Consensus MFE -31.19
Energy contribution -32.78
Covariance contribution 1.59
Combinations/Pair 1.37
Mean z-score -1.68
Structure conservation index 0.66
SVM decision value 0.26
SVM RNA-class probability 0.659397
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 497693 119 + 22224390
AGUUGGGUAUUACGAAUCUGGAGCAGAUGCUUCAAGUGCCGUUUGGCCAGUUGACCGAGGCUGGCCUAACUCUGGUCGAGAUCGGUGAGAUUCAGCGCAAAGCCGAGGACGCCAAGCCG-
.....(((.....((.(((.((.((((.((.......)).(((.((((((((......)))))))).))))))).)).)))))((((...(((.((.....)).)))..))))..))).- ( -42.50)
>DroVir_CAF1 7245 119 + 1
AGCUGGGCAUUAGCAAUCUGGAGCAGAUGCUGCAGGUGCCCUUCGGCCAGCUAACCGAGGCGGGCCUCACGCUGCCCGAAAUUGGUGAGAUCCAGCGCAAGGCCGAGGAGGCCAAGCCC-
....((((.......(((((.(((....))).)))))(((((((((((.(((.(((((..(((((........)))))...))))).......)))....)))))))).)))...))))- ( -54.80)
>DroGri_CAF1 6182 119 + 1
AGCUGGGCAUCACUAAUCUGGAGCAGAUGCAGCAGGUGCCAUUCGGCCAGCUAACCAAAGUGGGUCUCACACUGCUCGAAAUUGGUGAGAUCCAGCGCAAGGUCGAGGAGGCCAAGCCG-
.((((((..((((((((.(.((((((..(((.....))).....((((.(((......))).)))).....)))))).).))))))))..))))))((..((((.....))))..))..- ( -48.60)
>DroMoj_CAF1 7179 119 + 1
AGCUGGGCAUUACGAAUCUGGAGCAGAUGCUUCAGGUGCCCUUCGGUCAGCUGACCGAGGUGGGACUAACGCUGUCCGAGCUGGGUGAGAUCCAGCGCAAGGCCGAGGAGGCCAAGCCU-
.((((((((...((...(((((((....)))))))((.((((((((((....)))))))).)).))...)).)))))).(((((((...)))))))))..((((.....))))......- ( -56.30)
>DroAna_CAF1 7836 119 + 1
AGCUGGGCAUCACCAACCUGGAGCAGAUGAUGCAGAUUCCGUUAUGCCAGCUGACCGACGCCGGCCUGACGCUGAUCGAGAUCGGGGAGAUCCAGCGCAAGGCCGAGGACGCCAAGUCC-
((((((((((((((.....))......)))))).(....)......)))))).........((((((..(((((.....((((.....)))))))))..)))))).((((.....))))- ( -43.60)
>DroPer_CAF1 2196 120 + 1
AGCUGGGCAUUAGUAAUCUAGAGCAGAUGCUCGAAGUGCCCUUUGGCCAGCUGACGGAGGUGGGACUGACGCUGCUCGAGAUUGGGGAUAUACAGCGCAAGGCAUUGGAGGCCAAGGAAA
.((((...(((..((((((.((((((..((.(((((....)))))))(((((.((....)).)).)))...)))))).))))))..)))...))))....(((.......)))....... ( -39.30)
>consensus
AGCUGGGCAUUACCAAUCUGGAGCAGAUGCUGCAGGUGCCCUUCGGCCAGCUGACCGAGGCGGGCCUAACGCUGCUCGAGAUUGGUGAGAUCCAGCGCAAGGCCGAGGAGGCCAAGCCC_
.((((((..(((((.((((.((((((..((.......)).....((((.(((......))).)))).....)))))).)))).)))))..))))))((..(((.......)))..))... (-31.19 = -32.78 +   1.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:50 2006