Locus 1227

Sequence ID X_DroMel_CAF1
Location 3,660,438 – 3,660,534
Length 96
Max. P 0.999221
window1974

overview

Window 4

Location 3,660,438 – 3,660,534
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 90.06
Mean single sequence MFE -24.06
Consensus MFE -22.36
Energy contribution -22.76
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.26
Structure conservation index 0.93
SVM decision value 3.44
SVM RNA-class probability 0.999221
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3660438 96 - 22224390
UACA--CAAAACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA
....--..........(((((..(((.((((((((((((.....))))))))...........)))))))....)))))((((((...)))))).... ( -24.50)
>DroSec_CAF1 12336 94 - 1
G--A--CAACACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA
.--.--..........(((((..(((.((((((((((((.....))))))))...........)))))))....)))))((((((...)))))).... ( -24.50)
>DroSim_CAF1 8093 94 - 1
G--A--CAACACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUAGGAAUACGACGCCAACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA
.--.--..........(((((..(((.((((....(((((((.....))))).))........)))))))....)))))((((((...)))))).... ( -22.10)
>DroEre_CAF1 13203 98 - 1
UGCUCGAAAGACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA
.((((....)).....(((((..(((.((((((((((((.....))))))))...........)))))))....)))))((((((...)))))).)). ( -28.20)
>DroYak_CAF1 13337 85 - 1
UUC-------------AGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA
...-------------.((((..(((.((((((((((((.....))))))))...........)))))))....)))).((((((...)))))).... ( -21.00)
>consensus
U_CA__CAACACACCAGGCCACUUCACUCUAAUUCCGAUUCCGAAUCGGAAUACGACGCCUACUAGAUGACAAAUGGUCGAUGGCAACGCCAUCCGCA
................(((((..(((.((((((((((((.....))))))))...........)))))))....)))))((((((...)))))).... (-22.36 = -22.76 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:26 2006