Locus 1226

Sequence ID X_DroMel_CAF1
Location 3,660,259 – 3,660,371
Length 112
Max. P 0.989877
window1973

overview

Window 3

Location 3,660,259 – 3,660,371
Length 112
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 89.81
Mean single sequence MFE -41.14
Consensus MFE -36.80
Energy contribution -37.76
Covariance contribution 0.96
Combinations/Pair 1.09
Mean z-score -1.95
Structure conservation index 0.89
SVM decision value 2.19
SVM RNA-class probability 0.989877
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3660259 112 + 22224390
AAUGGAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUUCGUCGCAAAGCAUUGU-------CU
................((((((((.((((((((((((((....))))))))((((((((((.((......))..)))))(((....))).))))))))))).))).))))-------). ( -41.50)
>DroSec_CAF1 12157 112 + 1
AAUGGAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUCCGUCGCCAAGCAUUGU-------CU
...(.((((.((((((.....)))))))))).)((..(((.((((....((((((((((((.((......))..)))))(((....))).))))))).))))..)))..)-------). ( -43.00)
>DroSim_CAF1 7914 112 + 1
AAUGGAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUCCGUCGCAAAGCAUUGU-------CU
................((((((((.((((((((((((((....))))))))((((((((((.((......))..)))))(((....))).))))))))))).))).))))-------). ( -44.40)
>DroEre_CAF1 13044 94 + 1
AAUGAAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCAU------------------UGU-------CU
..((.((((.((((((.....)))))))))).))..((..((((...(((((((.((((............)))).)))))))..))))------------------..)-------). ( -33.60)
>DroYak_CAF1 13149 119 + 1
AAUGAAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUUCGUCGCAAAGCAUUGUCUGCCAUCU
..............(((.(((((.((((..((((((((...(((...(((((((.((((............)))).)))))))..))).....))))))))..)))).))))).))).. ( -43.20)
>consensus
AAUGGAUUAUCACAGUGACGGGCUGUGUGAUGCGAUGAUGAUGGUUAUCGCGGAACGGGGCUGUCAUUGAACCUGCUCCGUGGCUCCACGGUUCCGUCGCAAAGCAUUGU_______CU
.(((((......(((((((((.((.(((..(((((((((....)))))))))..))).)))))))))))........(((((....))))).)))))...................... (-36.80 = -37.76 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:25 2006