Locus 1224

Sequence ID X_DroMel_CAF1
Location 3,657,056 – 3,657,156
Length 100
Max. P 0.934257
window1968

overview

Window 8

Location 3,657,056 – 3,657,156
Length 100
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 84.21
Mean single sequence MFE -26.56
Consensus MFE -19.10
Energy contribution -20.66
Covariance contribution 1.56
Combinations/Pair 1.12
Mean z-score -2.37
Structure conservation index 0.72
SVM decision value 1.24
SVM RNA-class probability 0.934257
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3657056 100 + 22224390
AUAGUUUGUUUGUCUUUGCGAGGCCAAACCACUAGU-------UGCUGGAUGGCUUUUGCCUGUUUUGCCAAAAAAAAAAAAACCAAACCGCGAUUGCAAACCUGAA
.......((((((..(((((((((.((((((((((.-------..)))).))).))).))))(((((............))))).....)))))..))))))..... ( -25.50)
>DroSec_CAF1 8990 93 + 1
AUAGUUUGUUUGUCUUUGCGAGGCCAAACCACUAGU-------UGUUGGAUGGCUUUUGCCUGUUUUGCCAAA-------AAACCAAACCGCGAUUGCAAACCUGAA
.......((((((..(((((((((.((((((((((.-------..)))).))).))).))))(((((.....)-------)))).....)))))..))))))..... ( -24.60)
>DroSim_CAF1 4835 81 + 1
AUAGUUUGUUUGUCUUUGCGAGGCCAAACCACUAGU-------U--------------GCCUGUUUUGCCAAAA-----AAAACCAAACCGCGAUUGCAAACCUGAA
.......((((((..(((((((((..(((.....))-------)--------------))))(((((.......-----))))).....)))))..))))))..... ( -19.10)
>DroEre_CAF1 9926 101 + 1
CCAGUUUGUUUGUCUUUGCGAGGCUAAACCAUUAGUUGCUAGUUGCUGGAUGGCUUUUGCCUGUUUUGUCAAAA------AAACUAAACCGCGAUUGCAAACCUGAA
.(((...((((((..(((((((((.((((((((....((.....))..))))).))).))))(((((......)------)))).....)))))..))))))))).. ( -31.20)
>DroYak_CAF1 9982 93 + 1
CCAGUUUGUUUGUCUUUGCGAGGCCAAGCCAUUAGU-------UGCUGGAUGGCUUUUGCCUGUUUUGUCAAA-------AAACUAAACCGCGAUUGCAAACCUGAA
.(((...((((((..(((((((((.((((((((...-------.....))))))))..))))(((((.....)-------)))).....)))))..))))))))).. ( -32.40)
>consensus
AUAGUUUGUUUGUCUUUGCGAGGCCAAACCACUAGU_______UGCUGGAUGGCUUUUGCCUGUUUUGCCAAAA______AAACCAAACCGCGAUUGCAAACCUGAA
.(((...((((((..(((((((((.(((((((((((........))))).))).))).))))((((..............)))).....)))))..))))))))).. (-19.10 = -20.66 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:20 2006