| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,646,908 – 3,647,007 |
| Length | 99 |
| Max. P | 0.993422 |
| Location | 3,646,908 – 3,647,007 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.48 |
| Mean single sequence MFE | -30.56 |
| Consensus MFE | -12.62 |
| Energy contribution | -13.42 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.41 |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.993422 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3646908 99 - 22224390 G---------------------GUGCAGCCAUUGAAGCGUCUAAUCGACGCUUUCAUACACCAUGCGUACCCAAUGUACUUCAUACAAAGUGAGCAACCCACACAGGUGAUGCGCCGGAU (---------------------(((((...((.((((((((.....)))))))).)).((((....((((.....))))..........(((.......)))...)))).)))))).... ( -31.50) >DroSec_CAF1 16888 75 - 1 G---------------------GUGCAGCCAUUGAAGCGUCUAAUCGACGCUUUCAUACACCAUGCGUACCCAAUGUCCUUCAUAUAAAGUGAG------------------------UU (---------------------((((.((...(((((((((.....))))).))))........)))))))........(((((.....)))))------------------------.. ( -18.20) >DroSim_CAF1 8939 99 - 1 G---------------------GUGCAGCCAUUGAAGCGUCUAAUCGACGCUUUCAUACACCAUGCGUACCCAAUGUCCUUCAUAUAAAGUGAGCAACCCGCACAGGUGAUGCGCCGGAU (---------------------(((((...((.((((((((.....)))))))).)).((((.((((........((..(((((.....)))))..)).))))..)))).)))))).... ( -31.20) >DroEre_CAF1 19171 99 - 1 G---------------------GUGCAACCAUUGAAGCGUCUAAUCGACGCUUUUAUACACUCCAGGUACCCAAUAUUUCCCAUAUACCCCGAGCAAUCCGCACAGGUGAUACACCGGAU .---------------------((((....((.((((((((.....)))))))).))...(((..((((................))))..)))......)))).((((...)))).... ( -24.89) >DroYak_CAF1 10839 120 - 1 GGUUAAGGGUGCGGGGUGUGGGGUGCAACCAAUGAAGCGUCAAAUCGACGCAUUUAUACACUCCACGUACCCAAUGUUCUCUGUAUACCCUGAGCAAUCCGCACAGGUGAUACACCACAU (((...(((((((.((.(((((......)).((((((((((.....))))).))))).))).)).)))))))..........((((..((((.((.....)).))))..))))))).... ( -47.00) >consensus G_____________________GUGCAGCCAUUGAAGCGUCUAAUCGACGCUUUCAUACACCAUGCGUACCCAAUGUCCUUCAUAUAAAGUGAGCAACCCGCACAGGUGAUACACCGGAU ......................((((......(((((((((.....))))).))))(((.......)))...............................)))).((((...)))).... (-12.62 = -13.42 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:19 2006