Locus 1215

Sequence ID X_DroMel_CAF1
Location 3,622,499 – 3,622,594
Length 95
Max. P 0.506135
window1951

overview

Window 1

Location 3,622,499 – 3,622,594
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 97.89
Mean single sequence MFE -25.26
Consensus MFE -24.13
Energy contribution -24.13
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.96
SVM decision value -0.05
SVM RNA-class probability 0.506135
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3622499 95 + 22224390
AGCGCCUCUGCCUCCGCUCGGAAACGCAGUCGCAGCACGAGUAACGGCAGCAAAAGCAACAACAAAACUGCCAGUGGCCGCAUAUUUACAAAAAG
.(((((.((((..(.(((((....)).))).)..)).........(((((.................))))))).)).))).............. ( -24.13)
>DroSec_CAF1 1390 95 + 1
AGCGCCUCUGCCUCCGCUCGGAAACGCAGUCGCAGCACGAGUAACGGCAGCAAAAGCAACAACAAAACUGCCAGUGGCCGCAUAUUUACAAAAAG
.(((((.((((..(.(((((....)).))).)..)).........(((((.................))))))).)).))).............. ( -24.13)
>DroEre_CAF1 1385 95 + 1
AGCGCCUCUGCCUCCGCUCGGAAACGCAGUCGCAGCGCGAGUAACGGCAGCAAAAGCAACAACAAAACUGCCAGUGGCCGCAAAUUUACCAAAAG
.((((..((((.(((....)))...))))..)).))(((.((.(((((((.................))))).)).))))).............. ( -27.53)
>consensus
AGCGCCUCUGCCUCCGCUCGGAAACGCAGUCGCAGCACGAGUAACGGCAGCAAAAGCAACAACAAAACUGCCAGUGGCCGCAUAUUUACAAAAAG
.(((((.((((..(.(((((....)).))).)..)).........(((((.................))))))).)).))).............. (-24.13 = -24.13 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:05 2006