| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,622,128 – 3,622,228 |
| Length | 100 |
| Max. P | 0.516431 |
| Location | 3,622,128 – 3,622,228 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 84.79 |
| Mean single sequence MFE | -17.87 |
| Consensus MFE | -13.93 |
| Energy contribution | -13.93 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3622128 100 + 22224390 AUCAACAACAGCAACAAAAGCAAAUCGUUGAUUAUCAGCGUGUCAAUGAAAGGGCGCACAUGCAACCCACACAAAUA---UUGCAAAGUCAGCAGAAAAUAUC ..........((.......((((.((((((((.........))))))))..(((.((....))..))).........---)))).......)).......... ( -17.64) >DroSec_CAF1 1025 103 + 1 AUCAACAACAGCAACAAAGGCAAAUCGUUGAUUAUAAGCGUGUCAAUGAAAGGGCGCACAUGCAACACACACAAAUAUCAUUGCAAAGUCAGCAAAAAAUAUC ..........((.......)).....(((((((....(.(((((........))))).).(((((...............))))).))))))).......... ( -16.56) >DroEre_CAF1 1023 94 + 1 A---------ACAACAAAGGCAAAUUGUUGAUUUUCAGCGUAUCAAUGAAAGGGCGCACAUGCAACCCACGCAAAUAGCAUUGCAAAGUCAGCAAAGAAUACC .---------..............(((((((((((................(((.((....))..)))..((((......)))))))))))))))........ ( -19.40) >consensus AUCAACAACAGCAACAAAGGCAAAUCGUUGAUUAUCAGCGUGUCAAUGAAAGGGCGCACAUGCAACCCACACAAAUA_CAUUGCAAAGUCAGCAAAAAAUAUC ..........................(((((((....((((.(........).))))...(((((...............))))).))))))).......... (-13.93 = -13.93 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:05 2006