| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,592,047 – 3,592,150 |
| Length | 103 |
| Max. P | 0.594088 |
| Location | 3,592,047 – 3,592,150 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 96.14 |
| Mean single sequence MFE | -26.63 |
| Consensus MFE | -24.47 |
| Energy contribution | -24.47 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594088 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3592047 103 + 22224390 AUACAUAUGCGUGAGUAUUCGUAUAUUGUGUACAUAUGCCACGAGUACUGUACACAAGUUUUGCAGUCCAUUUUGCUACACUUAAAGUGCGCUUGUUGC-CGCC ((((..((((....))))..)))).((((((((((((.......))).)))))))))((...((((......)))).)).......(((.((.....))-))). ( -26.20) >DroSim_CAF1 37823 103 + 1 AUACAUAUGCGUGCGUAUUCGUAUAUUGUGUACAUAUGCCACGAGUACUGUACACAAGUUUUGCAGUCCAUUUUGCUACACUUAAUGUGCGCUUGUUGC-CGCC ........(((.(((....((((((((((((((((((.......))).)))))))((((...((((......))))...)))))))))))).....)))-))). ( -28.30) >DroEre_CAF1 46116 104 + 1 AUACAUAUGCGUACAUGUUCGUAUAUUGUGUACAUAUGCCACGAGUACUGUACACAAGUUUUGCAGUCCAUUUUGCUACACUUAAAGUGCGCUUGUUGCCCGCC ..(((...((((((...........((((((((((((.......))).)))))))))((...((((......)))).)).......)))))).)))........ ( -25.40) >consensus AUACAUAUGCGUGCGUAUUCGUAUAUUGUGUACAUAUGCCACGAGUACUGUACACAAGUUUUGCAGUCCAUUUUGCUACACUUAAAGUGCGCUUGUUGC_CGCC (((((((((((........)))))).)))))......((.((((((...((((..((((...((((......))))...))))...)))))))))).))..... (-24.47 = -24.47 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:03 2006