| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,591,727 – 3,591,833 |
| Length | 106 |
| Max. P | 0.535281 |
| Location | 3,591,727 – 3,591,833 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 92.99 |
| Mean single sequence MFE | -27.57 |
| Consensus MFE | -20.45 |
| Energy contribution | -20.23 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535281 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3591727 106 + 22224390 UUUCCAAUUAUUUGGGCUAACAGAGUUGGUGCUAGUAGCAGCUAUUGGCUAACUAACUUACGGUUAGCGGUGUCAUUUUUAUUAUACUAUCCAAAAUACUUGUGAA .((((((.(((((((((((((.((((((((((((((((...))))))))..))))))))...))))))(((((.((....)).)))))..)).))))).))).))) ( -32.20) >DroSec_CAF1 50719 102 + 1 UUUCCAAUUAUUUGGGCUAACCGAGUUGGUACUCGUAGCAGCUAUUGGCUA----ACUUACGGUUAGCGAUGUCAUUUUUAUUAUACUACCCAAAAUACUUGUGAA .((((((.((((((((((((((((((((((....((((...))))..))))----)))..))))))))((((.......)))).......)).))))).))).))) ( -26.30) >DroSim_CAF1 37514 102 + 1 UUUCCAAUUAUUUGGGCUAACCGAGUUGGUGCUCGUAGCAGCUAUUGGCUA----ACUCACAGUUAGCGAUGUCAUUUUUAUUAUACUACCCAAAAUACUUGUGAA .((((((.(((((((((((..(((((....))))))))).(.(((((.(((----((.....)))))))))).)................)).))))).))).))) ( -24.20) >consensus UUUCCAAUUAUUUGGGCUAACCGAGUUGGUGCUCGUAGCAGCUAUUGGCUA____ACUUACGGUUAGCGAUGUCAUUUUUAUUAUACUACCCAAAAUACUUGUGAA .((((((.(((((((((((((...((.(((.....((((........))))....))).)).))))))((((.......)))).......)).))))).))).))) (-20.45 = -20.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:04:02 2006