| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,584,982 – 3,585,083 |
| Length | 101 |
| Max. P | 0.962996 |
| Location | 3,584,982 – 3,585,083 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 88.70 |
| Mean single sequence MFE | -42.30 |
| Consensus MFE | -37.06 |
| Energy contribution | -37.73 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.962996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3584982 101 - 22224390 ------CGCCGCAGAGAUGAAAACCAUCACUUCCGGAGGCGCUCCAAGUACUGAGGAAUGUAGUAAAUACGUGCGUCGGUAUUGGUGAGCGCUGUCUGUGUG----------UGUGU ------(((((((((((((.....)))).........((((((((.((((((((.(.(((((.....))))).).)))))))).).))))))).)))))).)----------))... ( -41.60) >DroEre_CAF1 38642 117 - 1 ACGCACCGCCGCAGAGAUGAAAACCAUCACUUCCGGAGGCGCUUCAAGUACUGAGGAAUGUAGUAAAUACGUGCGUCGGUAUUGGUGAGCGCUGUCUGUGUGCGUGUAUGAGUGUAU (((((((((((((((((((.....)))).........(((((((..((((((((.(.(((((.....))))).).))))))))...))))))).)))))).))).))....)))).. ( -44.70) >DroYak_CAF1 39606 111 - 1 ACGCACCGCCGCAGAGAUGAAAACCAUCACUUCCGGAGGCGCUUCAAGUACUGAGGAAUGUAGUAAAUACGUGCGUCGGUAUUGGUGAGCGCUGUCUAUGUGUGU------GUGUAU (((((((((......((((.....))))......((((((((((..((((((((.(.(((((.....))))).).))))))))...))))))).)))..))).))------)))).. ( -40.60) >consensus ACGCACCGCCGCAGAGAUGAAAACCAUCACUUCCGGAGGCGCUUCAAGUACUGAGGAAUGUAGUAAAUACGUGCGUCGGUAUUGGUGAGCGCUGUCUGUGUG_GU______GUGUAU ......(((((((((((((.....)))).........(((((((..((((((((.(.(((((.....))))).).))))))))...))))))).)))))).)))............. (-37.06 = -37.73 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:52 2006