Locus 1201

Sequence ID X_DroMel_CAF1
Location 3,581,467 – 3,581,579
Length 112
Max. P 0.596039
window1930

overview

Window 0

Location 3,581,467 – 3,581,579
Length 112
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 76.56
Mean single sequence MFE -25.96
Consensus MFE -16.57
Energy contribution -18.26
Covariance contribution 1.69
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.64
SVM decision value 0.13
SVM RNA-class probability 0.596039
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3581467 112 + 22224390
UAAGUGACCCACAUUAAAUAUUUAUAAAUUAUCGA-------UAAUAUCGAUGAUUUGGUCGGAAUGGUUAUCGAUAAUAACUGAAUACUUUUUCAUCGUCUGCCAUAAUU-UUUGGGGG
.......((((.............(((((((((((-------(...))))))))))))......(((((...(((.......((((......)))))))...)))))....-..)))).. ( -24.61)
>DroSec_CAF1 39689 111 + 1
UAAGUGACCCACAUUAAAUAUUUAUAAAUUAUCGA-------UAGUAUCGAUGAUUUGGUCGGAAUGGUUAUCGAUGAUAACUGAAUACUUUUUCAUCGUCUGCCAUAAAA--UUGGGGG
.......((((.............(((((((((((-------(...))))))))))))......(((((...((((((...............))))))...)))))....--.)))).. ( -28.86)
>DroEre_CAF1 34930 109 + 1
UUAAUGACCCACAUUGAAUAUUUAUAAAUUAUCGA-------UAGUAUCGAUGUUUUGGUUA----GGUCAUCGAUGAUAACUGAAUACGUUUUCAUCGUCUGCCACAUUAUUUUGGGGG
.......(((.((..(((((....((((.((((((-------(...))))))).))))....----(((...((((((.(((.......))).))))))...)))....)))))))))). ( -25.60)
>DroYak_CAF1 36177 103 + 1
UUAAUGACCCACGCUAAAUGUUUAGAGGUAAUCCGUAUAUCGUAGUAUCGAUGUUUUGGUUA----GGCCAUCGAUGAUAACUAAGUACAUUCUCAUCGU-------------UUGGGGG
.......((((.((..........(((((...(((.((((((......))))))..)))...----.))).))(((((...............)))))))-------------.)))).. ( -24.76)
>consensus
UAAAUGACCCACAUUAAAUAUUUAUAAAUUAUCGA_______UAGUAUCGAUGAUUUGGUCA____GGUCAUCGAUGAUAACUGAAUACUUUUUCAUCGUCUGCCAUAAUA__UUGGGGG
.......((((.............(((((((((((............)))))))))))........(((...((((((...............))))))...))).........)))).. (-16.57 = -18.26 +   1.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:46 2006