| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 27,877 – 28,037 |
| Length | 160 |
| Max. P | 0.980368 |
| Location | 27,877 – 27,997 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.39 |
| Mean single sequence MFE | -40.57 |
| Consensus MFE | -35.62 |
| Energy contribution | -34.73 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.645190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 27877 120 - 22224390 UCGACUGUGCUGGCUGCCAGUGGAUCCUUCUGCUUCACCUGCGUUUGGCCCGGCCUUAGCAAGGUUGGUCCAAACACCAUGGCCAGAUUGUGCAACGACAUCUUGUUAUCUGUCUCCUUU ..(((((..(...((((((.(((........((.......))((((((.(((((((.....))))))).)))))).)))))).)))...)..))..(((.....)))....)))...... ( -39.00) >DroSec_CAF1 15072 120 - 1 UCGACUGUGCUGGCUGCCAGUGGAUCCUUCUGCUUCACCUGCGUUUGGCCCGGCCUCAGCAAGGUUGGUCCAAACACCAUGGCCAGAUUGUGCAACGACAUCUUGUUAUCUGUCUCCUUU ..(((((..(...((((((.(((........((.......))((((((.(((((((.....))))))).)))))).)))))).)))...)..))..(((.....)))....)))...... ( -38.90) >DroYak_CAF1 9559 120 - 1 UCGACAGUGCUGGCUGCCAGUGGAUCCUUUUGCUUCACCUGCGUUUGGCCCGGCCUAAGCAAGGUUGGUCCAAACACCAUUGCCAGAUUGUGCAACGACAUCUUGUUGUCUGCCUCCUUU ...(((((.(((((.((..(((((.(.....).)))))..))((((((.(((((((.....))))))).))))))......))))))))))((((((((.....))))).)))....... ( -43.80) >consensus UCGACUGUGCUGGCUGCCAGUGGAUCCUUCUGCUUCACCUGCGUUUGGCCCGGCCUAAGCAAGGUUGGUCCAAACACCAUGGCCAGAUUGUGCAACGACAUCUUGUUAUCUGUCUCCUUU ....((((((.((.((..((..((....))..)).)))).))((((((.(((((((.....))))))).))))))...)))).(((((...((((.(....))))).)))))........ (-35.62 = -34.73 + -0.88)
| Location | 27,917 – 28,037 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 98.06 |
| Mean single sequence MFE | -45.77 |
| Consensus MFE | -45.39 |
| Energy contribution | -45.17 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.99 |
| SVM decision value | 1.86 |
| SVM RNA-class probability | 0.980368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 27917 120 - 22224390 CUGAAGAAAGCAGUAUAGGAUUCCUGCCUGAGCCAUAACGUCGACUGUGCUGGCUGCCAGUGGAUCCUUCUGCUUCACCUGCGUUUGGCCCGGCCUUAGCAAGGUUGGUCCAAACACCAU .....(((.((((...((((((((((.(..(((((..(((.....)))..)))))).))).))))))).)))))))......((((((.(((((((.....))))))).))))))..... ( -46.40) >DroSec_CAF1 15112 120 - 1 CUGAAGAAAGCAGUAUAGGAUUCCUGCCUGAGCCAUAACGUCGACUGUGCUGGCUGCCAGUGGAUCCUUCUGCUUCACCUGCGUUUGGCCCGGCCUCAGCAAGGUUGGUCCAAACACCAU .....(((.((((...((((((((((.(..(((((..(((.....)))..)))))).))).))))))).)))))))......((((((.(((((((.....))))))).))))))..... ( -46.30) >DroYak_CAF1 9599 120 - 1 CUGAAGAAAGCAGUAUAGGAUUCCUGCCUGAGCCAUAACGUCGACAGUGCUGGCUGCCAGUGGAUCCUUUUGCUUCACCUGCGUUUGGCCCGGCCUAAGCAAGGUUGGUCCAAACACCAU .....(((.((((...((((((((((.(..(((((..((.......))..)))))).))).))))))).)))))))......((((((.(((((((.....))))))).))))))..... ( -44.60) >consensus CUGAAGAAAGCAGUAUAGGAUUCCUGCCUGAGCCAUAACGUCGACUGUGCUGGCUGCCAGUGGAUCCUUCUGCUUCACCUGCGUUUGGCCCGGCCUAAGCAAGGUUGGUCCAAACACCAU .....(((.((((...((((((((((.(..(((((..((.......))..)))))).))).))))))).)))))))......((((((.(((((((.....))))))).))))))..... (-45.39 = -45.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:10 2006