Locus 1195

Sequence ID X_DroMel_CAF1
Location 3,565,696 – 3,565,799
Length 103
Max. P 0.916856
window1919

overview

Window 9

Location 3,565,696 – 3,565,799
Length 103
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 75.97
Mean single sequence MFE -19.74
Consensus MFE -6.02
Energy contribution -7.72
Covariance contribution 1.70
Combinations/Pair 1.21
Mean z-score -2.89
Structure conservation index 0.30
SVM decision value 1.11
SVM RNA-class probability 0.916856
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3565696 103 - 22224390
AAAAAAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA--AAAAUACCGAAACGAGUGUGCAAAG-A
.............................((((-((-.((((....))....................(((((((....--...)))))))..)).))))))....-. ( -19.10)
>DroVir_CAF1 37811 83 - 1
AAAAAAAGUUUAGCAGAAGCUACACAAACGCGUCGCGUUGCAAAAAUGUGCUAAAAA-------------------------AUGCGCUCAGCUGUCGCAAGAGUAGG
.......((.((((....)))).)).(((((...)))))........((((......-------------------------..))))....(((((....)).))). ( -17.90)
>DroSec_CAF1 21988 103 - 1
AAAAAAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA--AAAAUACCGAAACGAGUGUGCAAAG-A
.............................((((-((-.((((....))....................(((((((....--...)))))))..)).))))))....-. ( -19.10)
>DroSim_CAF1 18775 104 - 1
AAAAAAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA-AAAAAUACCGAAACGAGUGUGCAAAG-A
.............................((((-((-.((((....))....................(((((((....-....)))))))..)).))))))....-. ( -19.40)
>DroEre_CAF1 21752 104 - 1
AAA-AAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUUAAACAAAAAUACCAAAUUGUGUGUGCAAAG-A
...-.........................((((-((-((((((..................))))...((((((((.......))))))))...))))))))....-. ( -23.47)
>DroYak_CAF1 23372 102 - 1
AAA-AAAUAUUCACAAUAUUCACACGAACGCAC-AC-ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUAGGUAUUAAA--AAAAUACCAAAUCGUGUGCGCAAAG-A
...-........................(((((-((-..((((..................)))).....((((((...--..)))))).....))))))).....-. ( -19.47)
>consensus
AAAAAAAUAUUCACAAUAUUCACACGAACGCAC_AC_ACGCAGAAAUGGCCUAAAAAUAUACUGUAAGUUGGUGUAAAA__AAAAUACCGAAACGAGUGUGCAAAG_A
....................(((((....((........))...........................(((((((.........))))))).....)))))....... ( -6.02 =  -7.72 +   1.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:36 2006