Locus 1192

Sequence ID X_DroMel_CAF1
Location 3,557,350 – 3,557,455
Length 105
Max. P 0.856395
window1913

overview

Window 3

Location 3,557,350 – 3,557,455
Length 105
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 86.34
Mean single sequence MFE -32.20
Consensus MFE -25.32
Energy contribution -25.38
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.79
SVM decision value 0.81
SVM RNA-class probability 0.856395
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3557350 105 + 22224390
UUUUUGCUUUUCUA-GCUGCCAUUCAGUUUGACGCGU---CGGUGGAAAAGUGGAAAAUUGAAUGGAAAGCGGGCGGGCAGGCAGGCAGCACUGCUGC-UAUGUCGAAUG
....((((..(((.-(((.(((((((((((..(((.(---(....))...)))..)))))))))))..))))))..))))((((((((((...)))))-).))))..... ( -41.50)
>DroSec_CAF1 12979 96 + 1
AUUUUGCUUUUCUA-GCUGCCAUUCAGUUUGACGCGGCGGCGGUGGAAAAGUGGAAAAUUGAAUGGAAAGCGGGCAGGCAG-------------CUGCGUAUGUCGAAUG
.(((..((((((((-((((((..((.....))...))))))..))))))))..)))..((((.......((((........-------------)))).....))))... ( -29.10)
>DroSim_CAF1 11054 96 + 1
AUUUUGCUUUUCUA-GCUGCCAUUCAGUUUGACGCGGCGGCGGUGGAAAAGUGGAAAAUUGAAUGGAAAGCGGGCAGGCAG-------------CUGCGUAUGUCGAAUG
.(((..((((((((-((((((..((.....))...))))))..))))))))..)))..((((.......((((........-------------)))).....))))... ( -29.10)
>DroYak_CAF1 14555 94 + 1
AUGUAGCUUAUCUAGGCUGCCAUUCAGUUUGACGCGG---CGCUGGAAAAGUGGAAAAUUGAAUGAAAAGCGGGCAGGCAG-------------CUGCGGAUGUCGAAUG
.(((((((..(((.(.((((((((((((((..(((..---..........)))..))))))))))....)))).)))).))-------------)))))........... ( -29.10)
>consensus
AUUUUGCUUUUCUA_GCUGCCAUUCAGUUUGACGCGG___CGGUGGAAAAGUGGAAAAUUGAAUGGAAAGCGGGCAGGCAG_____________CUGCGUAUGUCGAAUG
...............(((.(((((((((((..(((...............)))..)))))))))))..))).((((.((((.............))))...))))..... (-25.32 = -25.38 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:30 2006