Locus 119

Sequence ID X_DroMel_CAF1
Location 485,865 – 485,956
Length 91
Max. P 0.708497
window156

overview

Window 6

Location 485,865 – 485,956
Length 91
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 83.27
Mean single sequence MFE -39.37
Consensus MFE -24.34
Energy contribution -24.57
Covariance contribution 0.23
Combinations/Pair 1.09
Mean z-score -2.39
Structure conservation index 0.62
SVM decision value 0.37
SVM RNA-class probability 0.708497
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 485865 91 - 22224390
ACAAGGUCCCCCCUAACCCGACUCACAGUGCAGUUGGGACGCGGGCCCUGCCCUUUUCCUCGUCAGAAUUCGCCAAGGGCAGGGACACCUC---
...((((..(((....((((((((.....).)))))))....)))((((((((((.....((........))..))))))))))..)))).--- ( -35.20)
>DroSec_CAF1 3628 87 - 1
ACAAGGUCGCC----ACCCGACUCGCAGUGCAGUUGGGACGCGUGCCCUGGGCAG-AAUUCGCCAGAAUUCGCCAGGGGUAGGGAC--CUCGUG
((.(((((.((----.(((((((.((...))))))))).....((((((.(((.(-(((((....))))))))).)))))))))))--)).)). ( -43.80)
>DroSim_CAF1 3438 87 - 1
ACAAGGUCGCC----ACCCGACUCGCAGUGCAGUUGGGACGCGUGCCCUGGGCAU-UCCUCGCCAGAAUUCGCCAGGGGCAGGGAC--CUCGUG
((.(((((.((----.(((((((.((...))))))))).....((((((.(((((-((.......))))..))).)))))))))))--)).)). ( -39.10)
>consensus
ACAAGGUCGCC____ACCCGACUCGCAGUGCAGUUGGGACGCGUGCCCUGGGCAU_UCCUCGCCAGAAUUCGCCAGGGGCAGGGAC__CUCGUG
.....(((.((.....(((((((........)))))))......(((((.(((......((....))....))).))))).)))))........ (-24.34 = -24.57 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:44 2006