Locus 1189

Sequence ID X_DroMel_CAF1
Location 3,542,150 – 3,542,269
Length 119
Max. P 0.581436
window1909

overview

Window 9

Location 3,542,150 – 3,542,269
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.20
Mean single sequence MFE -37.76
Consensus MFE -29.44
Energy contribution -30.80
Covariance contribution 1.36
Combinations/Pair 1.06
Mean z-score -1.53
Structure conservation index 0.78
SVM decision value 0.10
SVM RNA-class probability 0.581436
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3542150 119 - 22224390
UAUUUUGCUUCCGUUUCGAUGCGGUAAUAUAUAAGUUGUCGACUGGUUGCGACGACAUCGUUU-UGCUGGGUAGAAAAUCGCAGUGGAAACGCAGUUUUCCCGUUCGCUAAUCGACGACA
..........((((......))))..........((((((((.(((((((((((....))(((-(((...))))))..)))))(((....))).............)))).)))))))). ( -32.90)
>DroSec_CAF1 50223 116 - 1
GCUUUUGCUGCCGUUUCGAUGCGGUAAUAUGCAAGUUGUCGACUGGUUGCG---ACAUCGUUU-UGCUGGAUGGAAAAUCGCAGUGGAAACGCAGUUUUCCCGUUCGCUAAUCGACGACA
....((((((((((......))))))....))))((((((((.((((.(((---(.......)-))).(((((((((((.((.((....)))).))))).)))))))))).)))))))). ( -40.60)
>DroSim_CAF1 51806 119 - 1
GAUUUUGCUGCCGUUUCGAUGCGGUAAUAUGCAAGUUGUCGACUGGUUGCGACGACAUCGUUU-UGCUGGAUGGAAAAUCGCAGUGGAAACGCAGUUUUCCCGUUCGCUAAUCGACGACA
....((((((((((......))))))....))))((((((((.((((.((((((....)))).-.)).(((((((((((.((.((....)))).))))).)))))))))).)))))))). ( -42.70)
>DroEre_CAF1 54516 119 - 1
GAUUUUGCUGCCGUUUCGAUGCGGCAAUAAGUAAGUUUUCGACUGGUUGCGAUGACAUCGUUUCUGCUGGCUGGAAAAUCG-AGUGGAAACGCAGUUUUCCCGUUCGCUAAUCAACGACA
...((((.((((((......)))))).))))...(((.(((.(.....)))).))).(((((...((..((.(((((((..-.(((....))).))))))).))..)).....))))).. ( -34.90)
>DroYak_CAF1 50137 118 - 1
GAUUUUUCUGCCGUUUCGAUGCGGUAAUAUGUAAGUUGUCGACUGGUUGCGACGACAUCGUUU-UGGUGGCAGGAAAAUCG-AGUGAAAACGCAGUUUUCCCGUUCGCUAAUCAACGACA
........((((((......))))))........(((((((.(.....)))))))).((((((-(((((((.(((((((.(-.((....)).).))))))).).)))))))..))))).. ( -37.70)
>consensus
GAUUUUGCUGCCGUUUCGAUGCGGUAAUAUGUAAGUUGUCGACUGGUUGCGACGACAUCGUUU_UGCUGGAUGGAAAAUCGCAGUGGAAACGCAGUUUUCCCGUUCGCUAAUCGACGACA
........((((((......))))))........((((((((.((((.((((((....)))...........(((((((....(((....))).))))))))))..)))).)))))))). (-29.44 = -30.80 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:27 2006