| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,537,551 – 3,537,642 |
| Length | 91 |
| Max. P | 0.757308 |
| Location | 3,537,551 – 3,537,642 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 89.87 |
| Mean single sequence MFE | -26.36 |
| Consensus MFE | -21.46 |
| Energy contribution | -20.94 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.757308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3537551 91 + 22224390 U--GACAC------AUUGAUGGGGAGUUUGGAAGAGAGAGCAGCUGCAAAGGCUAAAAUGCAAUAAAGCCGGCUGCAAUGCCCUAUAUCGUUCUCUUUC .--.....------......((((((..(((...((.(.(((..((((..((((............))))...)))).))))))...)))..)))))). ( -20.80) >DroSec_CAF1 45674 91 + 1 A--GACAC------AUUGAUGGGGAGUUCGGAAGAGAGAGCAGCUGCAAAGGCUAAAAUGCAAUAAAGCCGGCUGCAAUGCCCUAUAUCGUUCUCUUUC (--((.((------....((((((..(((....)))...((((((((....((......))......).)))))))....))))))...)))))..... ( -25.30) >DroSim_CAF1 47250 91 + 1 A--GACAC------AUUGAUGGGGAGUUCGGAAGAGAGAGCAGCUGCAAAGGCUAAAAUGCAAUAAAGCCGGCUGCAAUGCCCUAUAUCGUUCUCUUUC (--((.((------....((((((..(((....)))...((((((((....((......))......).)))))))....))))))...)))))..... ( -25.30) >DroEre_CAF1 49962 99 + 1 GGAGAGAGAUUUAGAUUGAUGGGGAGUUCGGAAGAGAGAGCAGCUGCAAAGGCUAAAAUGCAAUAAAGCCGGCUGCAAUGCUCUAUAGCGUUCUCUUUC .((((((((....(....((((((..(((....)))...((((((((....((......))......).)))))))....))))))..)..)))))))) ( -31.10) >DroYak_CAF1 45685 93 + 1 AGGGAGAG------GUUGAUAGGGAGUUCGGAAGAGAGAGCAGCUGCAAAGUCAAAAAUGCUAUAAAGCCGGCUGCAAUGCUUUAUAGCGUUCUCUUUC .(..((((------.(((((......(((....)))...((....))...))))).(((((((((((((..........)))))))))))))))))..) ( -29.30) >consensus A__GACAC______AUUGAUGGGGAGUUCGGAAGAGAGAGCAGCUGCAAAGGCUAAAAUGCAAUAAAGCCGGCUGCAAUGCCCUAUAUCGUUCUCUUUC ..................((((((..(((....)))...((((((((....((......))......).)))))))....))))))............. (-21.46 = -20.94 + -0.52)
| Location | 3,537,551 – 3,537,642 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 89.87 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -18.40 |
| Energy contribution | -18.76 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.726564 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3537551 91 - 22224390 GAAAGAGAACGAUAUAGGGCAUUGCAGCCGGCUUUAUUGCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCAAACUCCCCAUCAAU------GUGUC--A (.((((((........(((((((((((..((((..(......)..)))).)))))).))))))))))).)...............------.....--. ( -21.20) >DroSec_CAF1 45674 91 - 1 GAAAGAGAACGAUAUAGGGCAUUGCAGCCGGCUUUAUUGCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCGAACUCCCCAUCAAU------GUGUC--U (.((((((........(((((((((((..((((..(......)..)))).)))))).))))))))))).)...............------.....--. ( -21.20) >DroSim_CAF1 47250 91 - 1 GAAAGAGAACGAUAUAGGGCAUUGCAGCCGGCUUUAUUGCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCGAACUCCCCAUCAAU------GUGUC--U (.((((((........(((((((((((..((((..(......)..)))).)))))).))))))))))).)...............------.....--. ( -21.20) >DroEre_CAF1 49962 99 - 1 GAAAGAGAACGCUAUAGAGCAUUGCAGCCGGCUUUAUUGCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCGAACUCCCCAUCAAUCUAAAUCUCUCUCC ((.(((((.......((((((((((((..((((..(......)..)))).)))))).)))))).......((........))........))))).)). ( -24.30) >DroYak_CAF1 45685 93 - 1 GAAAGAGAACGCUAUAAAGCAUUGCAGCCGGCUUUAUAGCAUUUUUGACUUUGCAGCUGCUCUCUCUUCCGAACUCCCUAUCAAC------CUCUCCCU (.((((((..((((((((((..........))))))))))............((....))..)))))).)...............------........ ( -20.50) >consensus GAAAGAGAACGAUAUAGGGCAUUGCAGCCGGCUUUAUUGCAUUUUAGCCUUUGCAGCUGCUCUCUCUUCCGAACUCCCCAUCAAU______GUGUC__U (.((((((........(((((((((((..((((..(......)..)))).)))))).))))))))))).)............................. (-18.40 = -18.76 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:24 2006