Locus 1186

Sequence ID X_DroMel_CAF1
Location 3,537,064 – 3,537,179
Length 115
Max. P 0.612915
window1904

overview

Window 4

Location 3,537,064 – 3,537,179
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 83.00
Mean single sequence MFE -29.77
Consensus MFE -20.24
Energy contribution -19.05
Covariance contribution -1.19
Combinations/Pair 1.22
Mean z-score -1.66
Structure conservation index 0.68
SVM decision value 0.16
SVM RNA-class probability 0.612915
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3537064 115 - 22224390
ACUCAAGUA-----GAACUAUUGUAAUCUAUUCCCAGCGUCAAUUGCUUUUGUUUAGCGCGGGUGACAUUGCUCAUUGUCAACUGAGACAAGAGCAAAAACAAGAGCAGUGAAGAGAGCG
.(((.((((-----((((....))..)))))).......(((.((((((((((((......(....).((((((.(((((......)))))))))))))))))))))))))).))).... ( -36.50)
>DroSec_CAF1 45225 114 - 1
ACUCAAUUA-----GAACUAUUGUAAUCUAUUCCCAGCGUCAAUUG-UUUGGUUUAGCGCGGGUGACAUUGCUCAUUGUCAACUGAGACAAGAGCAAAAACAAGAGCCGUGGAGAGAGCG
.(((.....-----.............(((..((.((((.....))-)).))..)))(((((.((...((((((.(((((......)))))))))))...))....)))))..))).... ( -30.00)
>DroSim_CAF1 46777 112 - 1
ACUCAAAUA-----GAACUAUUGUAAUAUAUAUUAA--GUCAAUUG-UUUGGUUUAGCGCGGGUGACAUUGCUCAUUGUCAACUGAGACAAGAGCAAAAACAAGAGCCGUGGAGAGAGCG
.(((((((.-----((((.((((...((.....)).--..)))).)-))).))))..(((((.((...((((((.(((((......)))))))))))...))....)))))..))).... ( -28.10)
>DroEre_CAF1 49516 110 - 1
ACUCAACUAUUUAUGUAGCAUUAUAAGCUAUUCU--------AUUG-UUUUGUUGUGCGG-GGUGACAUUGCUUAUUGUCAACUAAGGUAAGAGCAAAAACAACAGCAGUGAAGAGAGCG
.(((..........(((((.......)))))..(--------((((-(..((((((....-(....).((((((.((..(......)..))))))))..))))))))))))..))).... ( -24.50)
>consensus
ACUCAAAUA_____GAACUAUUGUAAUCUAUUCCCA__GUCAAUUG_UUUGGUUUAGCGCGGGUGACAUUGCUCAUUGUCAACUGAGACAAGAGCAAAAACAAGAGCAGUGAAGAGAGCG
.(((............((....)).........................((((((......(....).((((((.(((((......)))))))))))......))))))....))).... (-20.24 = -19.05 +  -1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:22 2006