| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,501,281 – 3,501,379 |
| Length | 98 |
| Max. P | 0.510568 |
| Location | 3,501,281 – 3,501,379 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.04 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -17.31 |
| Energy contribution | -16.12 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.510568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3501281 98 - 22224390 ACAGAAUGUCCGAGACGGCCAGGUUGAUUAUCAGCAGAUUGGUGGUGGAGCGCAUCUGCUGGUUGGCCACAACCACUGCAACG--A-C-----AUGCAAAUUGGGA- ........(((((...(((((........((((((((((..(((......))))))))))))))))))........((((...--.-.-----.))))..))))).- ( -30.10) >DroVir_CAF1 119099 96 - 1 AGAGUAUGUCCGAGACGGCCAGGUUUAUAAUCAAUAGGUUUGUGGUCGAGCGCAUUUGUUGGUUAACGACAACCACUAAACGACAUGU-----AGGGAAA------U ....((((((((...((((((((..(((.....)))..))..))))))..))...((((((.....)))))).........)))))).-----.......------. ( -19.30) >DroPse_CAF1 11990 98 - 1 AUAGGAUGUCCGAGACGGCCAGGUUGAUAAUCAGCAGGUUGGUGGUCGAGCGCAUCUGUUGGUUGGCAACCACAACUGAAAGA--G-G-----AGGCAGAUCAGAG- ...((((((.(..(((.(((((.(((........))).))))).)))..).)))))).((((((.((..((.(........).--)-)-----..)).))))))..- ( -31.70) >DroWil_CAF1 104760 101 - 1 AUAAGAUAUCCGAUACGGCCAGGUUAAUAAUCAACAGAUUUGUAGUCGAACGCAUUUGUUGAUUGACAACCACAACUGCAAGU--A-AAACAAGUAUAAAUUAA--- ............((((.....((((..((((((((((((.(((......))).))))))))))))..))))...((.....))--.-......)))).......--- ( -19.50) >DroAna_CAF1 21353 101 - 1 ACAGGAUGUCCGAUACGGCCAGAUUGAUAAUCAGCAAGUUGGUGGUGGAGCGCAUCUGUUGGUUGGCCACAACCACUGCAAGU--A-CGGAAGAUUUAAAUAGU--- .((((((((.(..(((.(((((.(((........))).))))).)))..).)))))...((((((....))))))))).((((--.-(....))))).......--- ( -29.60) >DroPer_CAF1 12335 98 - 1 AUAGGAUGUCCGAGACGGCCAGGUUGAUAAUCAGCAGGUUGGUGGUCGAGCGCAUCUGUUGGUUGGCAACCACAACUGAAAGA--G-G-----AGGCAGAUCAGAG- ...((((((.(..(((.(((((.(((........))).))))).)))..).)))))).((((((.((..((.(........).--)-)-----..)).))))))..- ( -31.70) >consensus AUAGGAUGUCCGAGACGGCCAGGUUGAUAAUCAGCAGGUUGGUGGUCGAGCGCAUCUGUUGGUUGGCAACAACAACUGAAAGA__A_C_____AGGCAAAUCAG___ .(((..((.(((...))).))..))).((((((((((((..(((......))))))))))))))).......................................... (-17.31 = -16.12 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:06 2006