Locus 1176

Sequence ID X_DroMel_CAF1
Location 3,499,620 – 3,499,721
Length 101
Max. P 0.999868
window1884

overview

Window 4

Location 3,499,620 – 3,499,721
Length 101
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 91.10
Mean single sequence MFE -19.51
Consensus MFE -17.50
Energy contribution -18.30
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.87
Structure conservation index 0.90
SVM decision value 4.31
SVM RNA-class probability 0.999868
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3499620 101 + 22224390
GA---UAUCCUAUCAUUUACUUACGCCAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAACGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC
((---((...))))..............(((((((((.....((((((..((.((((.....)))).)))))))).........)))))))))........... ( -20.24)
>DroSec_CAF1 8256 101 + 1
GA---UGCCCUAUCAUUUACUUACCCCAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAACGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC
..---.......................(((((((((.....((((((..((.((((.....)))).)))))))).........)))))))))........... ( -19.94)
>DroSim_CAF1 8712 101 + 1
GA---UGCCCUAUCAUUUACUUAACCCAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAACGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC
..---.......................(((((((((.....((((((..((.((((.....)))).)))))))).........)))))))))........... ( -19.94)
>DroEre_CAF1 10603 104 + 1
GCUGAUGCCCCAUUAUUUAUUUGCCCUAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAAUGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC
(((((.((..............))....(((((((((.....((((((..((.((((.....)))).)))))))).........)))))))))......))))) ( -24.08)
>DroYak_CAF1 5638 97 + 1
GU---UGUCCCAUCAUUUUCUUACCCUA----GCAAUUUCAUGCAAAUACGUAUGCCAAAAUGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC
..---.......................----(((((.....((((((...(.((((.....)))).).)))))).........)))))............... ( -13.34)
>consensus
GA___UGCCCUAUCAUUUACUUACCCCAUUUGGCAAUUUCAUGCAAAUACUUAUGCCAAAACGGCAAAAAUUUGCUACCAAUCUGUUGCCAAAAACUAUUCAGC
............................(((((((((.....((((((.....((((.....))))...)))))).........)))))))))........... (-17.50 = -18.30 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:04 2006