| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,496,673 – 3,496,765 |
| Length | 92 |
| Max. P | 0.877342 |
| Location | 3,496,673 – 3,496,765 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 80.71 |
| Mean single sequence MFE | -16.25 |
| Consensus MFE | -10.89 |
| Energy contribution | -11.32 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.877342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3496673 92 + 22224390 CACAGCCCUCAUCCUCAUCCUCAUCCGCAUCCUCAUCCUUGUGCUC-AUGCUCGUCUUAUACCCAUGCCCAAGUGUCCUUGGGCUUUUUGGCC ....(((...................((((...(((....)))...-))))...............(((((((....))))))).....))). ( -18.90) >DroSec_CAF1 5378 79 + 1 CACAGCCA-UAUCCU------CAUCCUCG------UCCUCGUGCUC-AUGCUCGUCUUCUUCCCAUCCCCAAGUGUCCUUGGGCUUUUUGGCC ....((((-......------........------....((.((..-..)).)).............((((((....)))))).....)))). ( -16.50) >DroSim_CAF1 5418 85 + 1 CACAGCCA-CAUCCU------CAUCCUCGUCCUCGUCCUCGUGCUC-AUGCUCGUCUUCUUCCCAUCCCCAAGUGUCCUUGGGCUUUUUGGCC ....((((-......------..................((.((..-..)).)).............((((((....)))))).....)))). ( -16.40) >DroYak_CAF1 2556 86 + 1 CACAGCCA-UAUCCU------CAUCCUCAUCCUAAUUCUCAUCGUCGGUGCUCGUCUUAUUCGCAUCCCUAGUUGUCUUUGGGCUUUUUGGCC ....((((-......------.........................(((((...........)))))(((((......))))).....)))). ( -13.20) >consensus CACAGCCA_CAUCCU______CAUCCUCAUCCUCAUCCUCGUGCUC_AUGCUCGUCUUAUUCCCAUCCCCAAGUGUCCUUGGGCUUUUUGGCC ....(((................................((.((.....)).)).............((((((....))))))......))). (-10.89 = -11.32 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:02 2006