Locus 1173

Sequence ID X_DroMel_CAF1
Location 3,496,531 – 3,496,628
Length 97
Max. P 0.631926
window1880

overview

Window 0

Location 3,496,531 – 3,496,628
Length 97
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 76.93
Mean single sequence MFE -24.20
Consensus MFE -10.20
Energy contribution -10.53
Covariance contribution 0.33
Combinations/Pair 1.33
Mean z-score -2.16
Structure conservation index 0.42
SVM decision value 0.20
SVM RNA-class probability 0.631926
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3496531 97 - 22224390
AUAUGUGUUGACAAGAGUGCGCCACAAGUGUGUGCGAACGAUGGAGACAU---------AGAAGGGUCGAAAAGGGCCUAAAAAUGGGGGUCGAAACGGGG-----GGGGG
...(((.(((((....((.((((((....))).))).)).(((....)))---------....(((((......)))))..........))))).)))...-----..... ( -25.00)
>DroSec_CAF1 5241 93 - 1
AUAUGUGUUGACAAGAGUGCGCCACAAGUGUGUGCGAACGAUGAAGACAU---------AGAAGGGUCGAAAAGGGCCUAAAAA-GGGGGCCGAAAUGGG------GGG--
...((((((..((...((.((((((....))).))).))..))..)))))---------)..............(((((.....-..)))))........------...-- ( -23.10)
>DroSim_CAF1 5280 94 - 1
AUAUGUGUUGACAAGAGUGCGCCACAAGUGUGUGCGAACGAUGAAGACAU---------AGAAGGGUCGAAAAGGGCCUAAAAA-GGGGGCCGAAAUGGGG-----GGG--
...((((((..((...((.((((((....))).))).))..))..)))))---------)..............(((((.....-..))))).........-----...-- ( -23.10)
>DroEre_CAF1 5625 95 - 1
AUAUGUGUUGACAAGAGUGCGCCACAAGUGU--GCGAAUAAUGGAAACGU---------CGAAGGGUCGAAAAGGGCCUAAAAA-GGGGGG--AAAGAGGGCAUAAGGG--
.(((((.(((((....(..(((.....))).--.).......(....)))---------))).(((((......))))).....-......--.......)))))....-- ( -22.50)
>DroYak_CAF1 2423 89 - 1
AUAUGUGUUGACAAGAGUGCGCCACAAGUGU--GUGAAUGAUGAAGACGU---------CGAAAGGUCGAAAAGCCCCUAAAAA-GGGGGG--UAAG------UAAGGG--
.......(((((....(..(((.....))).--.)...(((((....)))---------))....)))))...((((((.....-.)))))--)...------......-- ( -21.10)
>DroAna_CAF1 8553 97 - 1
AUAUGUGUUGACAAGAGGGCGCCACAAGUGUCUAAGGACGAUGGAGACAUCAUCGCUAUCGAAGGAUAUGUCAGGGUCUA------GGGGUCGCACAAGG------GAG--
...(((((.(((....((((((.....))))))..((((((((....))))...((((((....)))).))....)))).------...))))))))...------...-- ( -30.40)
>consensus
AUAUGUGUUGACAAGAGUGCGCCACAAGUGUGUGCGAACGAUGAAGACAU_________AGAAGGGUCGAAAAGGGCCUAAAAA_GGGGGCCGAAAGGGG______GGG__
.......(((((.....(((((.....)))))........(((....)))...............)))))....(((((........)))))................... (-10.20 = -10.53 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:03:01 2006