| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 473,848 – 473,956 |
| Length | 108 |
| Max. P | 0.772680 |
| Location | 473,848 – 473,956 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 91.08 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -15.20 |
| Energy contribution | -15.00 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.772680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 473848 108 - 22224390 CAUUCCGUUAAUAUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGUCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUUCGCUCUCCCACCCAACAUCCUGUUUU .......................((((((.........)))))).......((((..(((..(((.((.............)))))..)))...)))).......... ( -17.52) >DroSec_CAF1 5815 108 - 1 CAUUCAAUUUCUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUCCCCUCUUUCACCCAACAUCCUGAUUU .........((((((((((((..((((.(..((....))..).)))).......))))))..))))))........................................ ( -17.90) >DroSim_CAF1 5842 108 - 1 CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGGUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUCCCCUCUUCCACCCAACAUCCUGAUUU ..........(((((......(..(((((......)))))..)((((..((...))..)))))))))......................................... ( -19.50) >DroEre_CAF1 5935 104 - 1 CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUCGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCGCUCUCACUCGCUCU----CCCAACAUCCUGUUUU ...........((((.....(((((((((......))))))((((((..((...))..))).)))))).....((........))...----...))))......... ( -19.60) >DroYak_CAF1 5972 104 - 1 CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUCGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCGCUCUCCCUCGCUCU----CCCAACAUCCUGUUUU ...........((((.....(((((((((......))))))((((((..((...))..))).)))))).....((........))...----...))))......... ( -19.60) >consensus CAUUCAAUUACUGUUCCCUUUCUGGCAACUCCAUUGUUGUUGCUGCCUCUCGUUGAAGGGCAAGCAGAUCUCCCCUCUCAUUCGCUCU__CACCCAACAUCCUGUUUU ....................(((((((((......))))))((((((..((...))..))).))))))........................................ (-15.20 = -15.00 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:42 2006