Locus 1168

Sequence ID X_DroMel_CAF1
Location 3,483,220 – 3,483,319
Length 99
Max. P 0.976577
window1874

overview

Window 4

Location 3,483,220 – 3,483,319
Length 99
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 85.19
Mean single sequence MFE -21.83
Consensus MFE -20.71
Energy contribution -20.52
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -2.06
Structure conservation index 0.95
SVM decision value 1.77
SVM RNA-class probability 0.976577
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3483220 99 - 22224390
GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUAGCCCAUCACCCCCCUCC----------CCCCC
(((....)))..(((.((......((((((((((.(((....))).).)))))))))..(((((.....)))))...)))))............----------..... ( -21.80)
>DroSec_CAF1 44003 97 - 1
GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACAAAAUGCGAAAGUUUUACUUUCAUAGCCCG--ACCCCCCAUA----------CCCCC
(((....))).((((.((......((((((((((.(((....))).).)))))))))..(((((.....)))))...)))))--).........----------..... ( -22.60)
>DroSim_CAF1 38430 97 - 1
GUCCCCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACAAAAUGCGAAAGUUUUACUUUCAUAGCCCG--ACCCCCCACA----------CCCCC
(((....))).((((.((......((((((((((.(((....))).).)))))))))..(((((.....)))))...)))))--).........----------..... ( -22.60)
>DroEre_CAF1 46974 88 - 1
GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUCACCCA-------CUUU--------------CC
(((....)))..(((.((((((......)))))).....((((.(((....))).....(((((.....))))))))).)))-------....--------------.. ( -18.80)
>DroYak_CAF1 45826 88 - 1
GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUCGCCCA-------CUUU--------------CC
(((....)))...((((.......((((((((((.(((....))).).)))))))))..(((((.....)))))..))))..-------....--------------.. ( -22.60)
>DroAna_CAF1 78376 107 - 1
GUUCCCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUCGCCUU--GCCCCACUCCCCUGAGCCCUUCCCC
.............((((.......((((((((((.(((....))).).)))))))))..(((((.....)))))..))))..--......(((....)))......... ( -22.60)
>consensus
GUCCUCUGACUUUGGCGCCACACAAUUUUGUGGCCACAUUGAUGUCGCCCACGAAAUGCGAAAGUUUUACUUUCAUAGCCCA__ACCCCCCUC___________CCCCC
(((....)))...(((........((((((((((.(((....))).).)))))))))..(((((.....)))))...)))............................. (-20.71 = -20.52 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:55 2006