Locus 1167

Sequence ID X_DroMel_CAF1
Location 3,481,662 – 3,481,757
Length 95
Max. P 0.588963
window1873

overview

Window 3

Location 3,481,662 – 3,481,757
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 83.14
Mean single sequence MFE -21.35
Consensus MFE -15.10
Energy contribution -14.70
Covariance contribution -0.40
Combinations/Pair 1.33
Mean z-score -1.65
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.588963
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3481662 95 + 22224390
GUAGAUCCUUAAUUCUGCUAUCUUUCAUCACUUUUUUUGUCUUUAUUGUGAGGAGAAUUAAAGUGGCUAUAGAUUUGCCAUUACGGGACCAUAAU
...(.((((((((...((.((((....(((((((..((.(((((.....))))).))..)))))))....))))..)).)))).)))).)..... ( -20.80)
>DroSec_CAF1 42580 92 + 1
--AGAUCCUUACUUCUGCUAUCUUCCACCAAUUU-UUUGUCUUUAUUGUGACGAGGAUUAAAGUGGCUAUGGAUUUGCCAUUACGGGACCAUAAU
--.(.((((.......((.((((.((((....((-((((((........)))))))).....))))....))))..))......)))).)..... ( -19.12)
>DroSim_CAF1 36983 92 + 1
--AGAUCCUUACUUCUGCUAUCUUCCACCACUUU-UUUGUCUUUAUUGUGACGAGGAUUAAAGUGGCUAUGGAUUUGCCAUUACGGGAACAUAAU
--.(.((((.......((.....(((((((((((-...((((((........)))))).)))))))...))))...))......)))).)..... ( -20.82)
>DroEre_CAF1 45503 91 + 1
--GGCUCUUCAAUUCCGCCAUCUUCAACCACUU--UUUGUCUUUAUUGUGACGAGGACAUAAGUGGCUAUGGAUUUGCCAUUACAGGGCCAUAAC
--((((((..(((...((.((((....((((((--..(((((((........))))))).))))))....))))..)).)))..))))))..... ( -26.90)
>DroYak_CAF1 44432 91 + 1
--GGAUAUUUACUUCUGCCAUUUUCAACCACUU--UCUGUCUUUAUUGUGAUGGGGAUAAAAGUGAAAAUGGAUUUGCCUUUACAGAGCCAUAAU
--((.............(((((((((.....(.--.(((((........)))))..)......))))))))).((((......)))).))..... ( -19.10)
>consensus
__AGAUCCUUACUUCUGCUAUCUUCCACCACUUU_UUUGUCUUUAUUGUGACGAGGAUUAAAGUGGCUAUGGAUUUGCCAUUACGGGACCAUAAU
...(.((((.......((.((((....(((((((.((((((........))))))....)))))))....))))..))......)))).)..... (-15.10 = -14.70 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:55 2006