Locus 1166

Sequence ID	X_DroMel_CAF1
Location	3,480,925 – 3,481,015
Length	90
Max. P	0.922114

overview

Window 2

Location	3,480,925 – 3,481,015
Length	90
Sequences	6
Columns	115
Reading direction	reverse
Mean pairwise identity	73.50
Mean single sequence MFE	-31.27
Consensus MFE	-16.09
Energy contribution	-17.37
Covariance contribution	1.28
Combinations/Pair	1.18
Mean z-score	-1.99
Structure conservation index	0.51
SVM decision value	1.15
SVM RNA-class probability	0.922114
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 3480925 90 - 22224390
-------CCGUUUCCCGUGCAAAUAUGCGAACUG------GGAAUGGCGAAAGCCAAAGGCGAAGGCCAAAAGGGUUGCGAAACA-------ACUGUGAUUAUUUU----GUUA-
-------....((((((((((....))))...))------))))((((....))))..(((....)))((((..((..((.....-------..))..))..))))----....- ( -29.10)
>DroSec_CAF1 41818 90 - 1
-------CCGUUUCCCGUGCAAAUAUGCGAACUG------GGAAUGGCAAAAGCCAGAGGCGGUGGCCAAAAGGGUUGCGAAACA-------ACUGCGCUGGGUUU----GUCA-
-------....((((((((((....))))...))------))))(((((((..((((..(((((..((....))(((....))).-------))))).)))).)))----))))- ( -30.20)
>DroSim_CAF1 36218 97 - 1
CCGCUUUCCGUUUCCCGUGCAAAUAUGCGAACUG------GGAAUGGCAAAAGCCAGAGGCGGAGGCCAAAAGGGUUGCGAAACA-------ACUGCGCUGGGUUU----GUCA-
(((((((....((((((((((....))))...))------))))((((....)))))))))))(((((....((((((.....))-------))).)....)))))----....- ( -31.70)
>DroEre_CAF1 44656 104 - 1
-------CCGUUUCCCGUGCAAAUAUGCCAACUGGCACUGGCAGUGGCGAAAGCCAGAGGCGGAGGCCAAAAGGGUUGCGAAACGGUUGGUUGCUACGAAAGUGCG----GCCUU
-------(((((((....(((.....(((...((((.(((.(..((((....))))..).)))..))))....)))))))))))))..((((((.((....)))))----))).. ( -45.90)
>DroYak_CAF1 43611 90 - 1
-------CCGUUUCCCGUGCAAAUAUGCGAACUG------GAAAUGGCGAAAGCCAGGGGCGGAGGCCGAAAGGGUUGCGAAACA-------ACUACGAAGGACUU----GUCA-
-------((((..((((((((....))))...))------)...((((....)))))..))))(((((.....(((((.....))-------))).....)).)))----....- ( -29.70)
>DroAna_CAF1 72487 93 - 1
-------CCGUUUCCUGUGCAAAUAUGCAAUCUGG-----GGAAUGGCAAAGAUCCAAGUGUGGGGCGAAAAGGAUUC--AAAAA-------ACUAUAAUGGGAGCAAAAGAUA-
-------(((((((((.((((....))))....))-----)))))))....(.(((...(((((...(((.....)))--.....-------.)))))...))).)........- ( -21.00)
>consensus
_______CCGUUUCCCGUGCAAAUAUGCGAACUG______GGAAUGGCAAAAGCCAGAGGCGGAGGCCAAAAGGGUUGCGAAACA_______ACUACGAUGGGUUU____GUCA_
........(((..(((.((((....))))...............((((....))))..(((....)))....)))..)))................................... (-16.09 = -17.37 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:54 2006