| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 3,472,064 – 3,472,168 |
| Length | 104 |
| Max. P | 0.858244 |
| Location | 3,472,064 – 3,472,168 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 77.74 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -13.20 |
| Energy contribution | -15.68 |
| Covariance contribution | 2.48 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.09 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.858244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 3472064 104 - 22224390 ---------UUUAGUGGUUUAUGACUGUCAUUUGCCUGAUUACUCAGGUGAGUCGCAGAUAUUAAGCAC----UAAAAACAUUGACGAACAUCAUUAUCCUUAAUGC-ACUGCAACAA ---------(((((((.((.(((.((((.(((..(((((....)))))..))).)))).))).)).)))----))))..((((((.((.........)).)))))).-.......... ( -28.90) >DroSec_CAF1 33063 104 - 1 ---------UUUAGUGGUUUAUGACUGUCAUUUGCCUGAUUACUCAGGUGAGUCCCAGAUAUUAAGCAC----UAAAAACAUUGACGAACAGCAUUAUCCUUAAUGC-ACUGCAACAA ---------(((((((.((.(((.(((..(((..(((((....)))))..)))..))).))).)).)))----))))..............((((((....))))))-.......... ( -30.90) >DroEre_CAF1 35734 104 - 1 ---------UUUAGUGGUUUAUGGCUGUCAUUUGGCUGAUUACUCAGGUGAGUCCCAGAUAUUAAGCAC----UAAAAACAUUGACGAACAGCAUUAUCCUUAAUGC-ACUGCCACAA ---------(((((((.((.(((.(((..(((((.((((....)))).)))))..))).))).)).)))----))))..............((((((....))))))-.......... ( -25.70) >DroYak_CAF1 33853 104 - 1 ---------UUUAGUGGUUUAUGGCUGUCAUUUGGCUGAUUACUCAGGUGAGUCCCAGAUAUUAAGCAC----UAAAAACAUCGACGAACAGCAUUAUCCUUAAUGU-ACUGCCACAA ---------(((((((.((.(((.(((..(((((.((((....)))).)))))..))).))).)).)))----))))..............((((((....))))))-.......... ( -23.40) >DroAna_CAF1 58351 107 - 1 AACUUGCUCGUCAGUCGU-UAUG----------GCUUGAUGGUUCAGGUAGAACCCAGACAUUAAACUCUUACAAAAAAUAUUGAUAAUCAUCAUUAUCCUUGUCGCCAGCGCGAAGU ..............((((-..((----------((.....(((((.....)))))..((((.(((....)))...........((((((....))))))..))))))))..))))... ( -20.20) >consensus _________UUUAGUGGUUUAUGACUGUCAUUUGCCUGAUUACUCAGGUGAGUCCCAGAUAUUAAGCAC____UAAAAACAUUGACGAACAGCAUUAUCCUUAAUGC_ACUGCAACAA .............(((((..(((.(((..((((((((((....))))))))))..))).))).............................((((((....))))))....))))).. (-13.20 = -15.68 + 2.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:02:51 2006